Warning: file(/var/www/html/resource_browser/extensions/p1samples_.txt): failed to open stream: No such file or directory in /var/www/html/resource_browser/extensions/gene_exptable.php on line 21

Warning: count(): Parameter must be an array or an object that implements Countable in /var/www/html/resource_browser/extensions/gene_exptable.php on line 38
Difference between revisions of "Template:EntrezGene" - resource_browser
Personal tools

Difference between revisions of "Template:EntrezGene"

From FANTOM5_SSTAR

Jump to: navigation, search
m
m
Line 10: Line 10:
 
<tr><th scope="row" align="right" valign="top">Species:</th><td>{{#set:tax_id={{{tax_id}}}}}{{#switch:{{{tax_id}}}|9606=Human (Homo sapiens)|10090=Mouse (Mus musculus)|NA}}</td></tr>
 
<tr><th scope="row" align="right" valign="top">Species:</th><td>{{#set:tax_id={{{tax_id}}}}}{{#switch:{{{tax_id}}}|9606=Human (Homo sapiens)|10090=Mouse (Mus musculus)|NA}}</td></tr>
 
<!--<tr><th scope="row" align="right" valign="top">[[Property:tax_id|Tax ID]]:</th><td>[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[[tax_id::{{{tax_id}}}]]&mode=Info {{{tax_id}}}]</td></tr>-->
 
<!--<tr><th scope="row" align="right" valign="top">[[Property:tax_id|Tax ID]]:</th><td>[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[[tax_id::{{{tax_id}}}]]&mode=Info {{{tax_id}}}]</td></tr>-->
<tr><th scope="row" align="right" valign="top">External refs:</th><td>{{#if:{{{GeneID}}}|''EntrezGene'':[http://www.ncbi.nlm.nih.gov/gene/{{{GeneID}}} {{{GeneID}}}]{{#arraydefine:gene_raw_array|{{{dbXrefs}}}|;;}}{{#vardefine:species_temp|{{#switch:9606|9606=Homo_sapiens|10090=Mus_musculus|NA}}}}{{#loop: i
+
<tr><th scope="row" align="right" valign="top">External refs:</th><td>{{#if:{{{GeneID}}}|''EntrezGene'':[http://www.ncbi.nlm.nih.gov/gene/{{{GeneID}}} {{{GeneID}}}]{{#arraydefine:gene_raw_array|{{{dbXrefs}}}|;;}}{{#vardefine:species_temp|{{#switch:{{{tax_id}}}|9606=Homo_sapiens|10090=Mus_musculus|NA}}}}{{#loop: i
 
   | 0           
 
   | 0           
 
   | {{#arraysize:gene_raw_array}}
 
   | {{#arraysize:gene_raw_array}}

Revision as of 05:48, 7 January 2014

Symbol:{{{Symbol}}}
Description:{{{description}}}
Synonyms:
Species:NA
External refs:EntrezGene:{{{GeneID}}}{{{dbXrefs}}}:[NA ]
Associated motifs:NA
Transcripton Factor?: No
TSS regions:

View on UCSC genome browser OSC local mirror

Mouse over to see Genome browser image, Click image to go to Genome browser

TSS expression

Sample





  • Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis

Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erick Arner
No analysis results for this cluster

Details

Summary:It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.
data source :
human
mouse

GeneID:{{{GeneID}}}
LocusTag:{{{LocusTag}}}
chromosome:{{{chromosome}}}
map location:
type of gene:{{{type_of_gene}}}
Symbol from
nomenclature authority:
{{{Symbol_from_nomenclature_authority}}}
Full name from
nomenclature authority:
{{{Full_name_from_nomenclature_authority}}}
Nomenclature status:{{{Nomenclature_status}}}
Other designations:
Modification date:{{{Modification_date}}}