Warning: file(/var/www/html/resource_browser/extensions/p1samples_.txt): failed to open stream: No such file or directory in /var/www/html/resource_browser/extensions/gene_exptable.php on line 21

Warning: count(): Parameter must be an array or an object that implements Countable in /var/www/html/resource_browser/extensions/gene_exptable.php on line 38
Difference between revisions of "Template:EntrezGene" - resource_browser
Personal tools

Difference between revisions of "Template:EntrezGene"

From FANTOM5_SSTAR

Jump to: navigation, search
m
m
Line 36: Line 36:
 
});
 
});
 
</script>
 
</script>
</html><br>
+
</html>
{{Fontsize|3|View on UCSC genome browser }}
+
<h2>View on UCSC genome browser OSC local mirror</h2>
----
 
 
<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa;  overflow:auto;">
 
<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa;  overflow:auto;">
 
Mouse over to see Genome browser image, Click image to go to Genome browser
 
Mouse over to see Genome browser image, Click image to go to Genome browser
{{#ucsc_gb_link:{{#replace:{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]]|link=none|headers=hide|limit=1|searchlabel=}}|FFCP_PHASE1:|}}}}
+
{{#ucsc_gb_link:{{#replace:{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]]|link=none|headers=hide|limit=1|searchlabel=}}|FFCP_PHASE1:|}}|https://fantom5-collaboration.gsc.riken.jp/ucsc/|3000}}
 
</div><br>
 
</div><br>
 
{{Fontsize|3|TSS expression}}
 
{{Fontsize|3|TSS expression}}

Revision as of 00:53, 8 April 2014

Symbol:{{{Symbol}}}
Description:{{{description}}}
Synonyms:
Species:NA
Xrefs:
EntrezGene:{{{GeneID}}}
{{{dbXrefs}}}:[NA ]
Associated motifs:NA
Transcripton Factor?: No
TSS regions:NA

View on UCSC genome browser OSC local mirror

Mouse over to see Genome browser image, Click image to go to Genome browser


TSS expression




Sample






  • Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner
Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.


link to source dataset.
data


No analysis results for this cluster

DetailsSummary:It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.

links to source dataset.
human
mouse


GeneID:{{{GeneID}}}
LocusTag:{{{LocusTag}}}
chromosome:{{{chromosome}}}
map location:
type of gene:{{{type_of_gene}}}
Symbol from
nomenclature authority:
{{{Symbol_from_nomenclature_authority}}}
Full name from
nomenclature authority:
{{{Full_name_from_nomenclature_authority}}}
Nomenclature status:{{{Nomenclature_status}}}
Other designations:
Modification date:Error: Invalid time.