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Difference between revisions of "Template:EntrezGene"

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m (Reverted edits by A-Kondo (talk) to last revision by Imad)
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</td></tr>
 
</td></tr>
 
<tr><th scope="row" align="right" valign="top">Transcripton Factor?: </th><td>{{#switch:{{{tf?}}}|yes=[[tf?::Yes]]|[[tf?::No]]}}</td></tr>
 
<tr><th scope="row" align="right" valign="top">Transcripton Factor?: </th><td>{{#switch:{{{tf?}}}|yes=[[tf?::Yes]]|[[tf?::No]]}}</td></tr>
 +
<tr><th scope="row" align="right" valign="top"> TSS regions:</th><td>{{#if:{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]
 +
|?Short description
 +
|format=ul
 +
|headers=hide
 +
|sort=Short description
 +
}}|{{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]
 +
|?Short description
 +
|format=ul
 +
|headers=hide
 +
|sort=Short description
 +
}}|NA}}
 +
</td></tr>
 
</table>
 
</table>
 
{{Fontsize|3|TSS regions }}
 
----
 
<span id="ffcp_list_table_export_tool"></span>
 
{{#compound_query:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]];?Short_description|[[FFCP PHASE1:+]][[EntrezGene::{{{GeneID}}}]];?Short_description|format=ttable|mainlabel=TSS peak ID|class=ffcp_list|limit=20000}}
 
<br>
 
 
<html>
 
<html>
 
<script language="javascript" type="text/javascript">
 
<script language="javascript" type="text/javascript">
 
$(document).ready(function() {  
 
$(document).ready(function() {  
// TSS regions list
 
  var ffcp_list_table = $('.ffcp_list').dataTable();
 
  var  ffcp_list_table_tools = new TableTools( ffcp_list_table, {"sSwfPath": "/5/sstar/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
 
 
$('#ffcp_list_table_export_tool').before(ffcp_list_table_tools.dom.container );
 
 
 
// hide-show animation for ucsc genome browser view
 
// hide-show animation for ucsc genome browser view
 
$("#ucsc_snap_view").hover(function(){
 
$("#ucsc_snap_view").hover(function(){
Line 289: Line 289:
  
 
[[Category:EntrezGene]]
 
[[Category:EntrezGene]]
 
{{#set:GeneID={{{GeneID}}}}}
 
{{#set:LocusTag ={{{LocusTag}}}}}
 
{{#set:chromosome={{{chromosome}}}}}
 
{{#set:type_of_gene={{{type_of_gene}}}}}
 
{{#set:map_location={{{map_location}}}}}
 
{{#set:Symbol_from_nomenclature_authority={{{Symbol_from_nomenclature_authority}}}}}
 
{{#set:Full_name_from_nomenclature_authority={{{Full_name_from_nomenclature_authority}}}}}
 
{{#set:Nomenclature_status={{{Nomenclature_status}}}}}
 
{{#set:Other_designations={{{Other_designations}}}}}
 
<!--
 
{{#set:Modification_date={{{Modification_date|}}}}}
 
-->
 
[[Modification_date::{{{Modification_date}}}|]]
 
  
 
<!--{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]|?name|format=count}}{{#if:{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]}}|{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]
 
<!--{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]|?name|format=count}}{{#if:{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]}}|{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]

Revision as of 06:44, 15 June 2017

Symbol:{{{Symbol}}}
Description:{{{description}}}
Synonyms:
Species:NA
Xrefs:
EntrezGene:{{{GeneID}}}
{{{dbXrefs}}}:[NA ]
Associated motifs:NA
Transcripton Factor?: No
TSS regions:NA


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


TSS expression










  • Click each plot point to find sample in table

ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner
Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.


link to source dataset.
data


No analysis results for this cluster

DetailsSummary:It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.

links to source dataset.
human
mouse


GeneID:{{{GeneID}}}
LocusTag:{{{LocusTag}}}
chromosome:{{{chromosome}}}
map location:
type of gene:{{{type_of_gene}}}
Symbol from
nomenclature authority:
{{{Symbol_from_nomenclature_authority}}}
Full name from
nomenclature authority:
{{{Full_name_from_nomenclature_authority}}}
Nomenclature status:{{{Nomenclature_status}}}
Other designations:
Modification date:Error: Invalid time.