Template:EntrezGene: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(155 intermediate revisions by 4 users not shown) | |||
Line 1: | Line 1: | ||
{{Loading|loadingimage=sprites.gif}}<html><script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script> | |||
<script language="javascript" type="text/javascript" src="/5/sstar/rb_js/flot/jquery.flot.js"></script><script language="javascript" type="text/javascript" src="/5/sstar/rb_js/flot/jquery.flot.axislabels.js"></script> | |||
<script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script></html> | |||
<table> | <table> | ||
<tr><th scope="row" align="right" valign="top"> [[Property:Symbol|Symbol]]:</th><td>[[Symbol::{{{Symbol}}}]]</td></tr> | <tr><th scope="row" align="right" valign="top">[[Property:Symbol|Symbol]]:</th><td>{{#if:{{{Symbol}}}|[[Symbol::{{{Symbol}}}]]|NA}}</td></tr> | ||
<tr><th scope="row" align="right" valign="top"> [[Property:Description|Description]]:</th><td>[[description::{{{description}}}]]</td></tr> | <tr><th scope="row" align="right" valign="top">[[Property:Description|Description]]:</th><td>{{#if:{{{description}}}|[[description::{{{description}}}]]|NA}}</td></tr> | ||
<tr><th scope="row" align="right" valign="top">[[Property:Synonyms|Synonyms]]:</th><td>{{#show:{{FULLPAGENAME}}|?Synonyms}}</td></tr> | <tr><th scope="row" align="right" valign="top">[[Property:Synonyms|Synonyms]]:</th><td>{{#switch:{{{Synonyms}}}|- = NA| |#default = {{#show:{{FULLPAGENAME}}|?Synonyms}} }}</td></tr> | ||
<tr><th scope="row" align="right" valign="top">Species:</th><td>{{#set:tax_id={{{tax_id}}}}}{{#switch:{{{tax_id}}}|9606=Human (Homo sapiens)|10090=Mouse (Mus musculus)}}</td></tr> | <tr><th scope="row" align="right" valign="top">Species:</th><td>{{#set:tax_id={{{tax_id}}}}}{{#switch:{{{tax_id}}}|9606=Human (Homo sapiens)|10090=Mouse (Mus musculus)|NA}}</td></tr> | ||
<!-- | <!-- | ||
<tr><th scope="row" align="right" valign="top">[[Property:tax_id|Tax ID]]:</th><td>[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[[tax_id::{{{tax_id}}}]]&mode=Info {{{tax_id}}}]</td></tr> | <tr><th scope="row" align="right" valign="top">[[Property:tax_id|Tax ID]]:</th><td>{{#if:{{{tax_id}}}|[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[[tax_id::{{{tax_id}}}]]&mode=Info {{{tax_id}}}]|NA}}</td></tr> | ||
--> | --><tr><th scope="row" align="right" valign="top">Xrefs:</th><td>{{#if:{{{GeneID}}}|{{GeneExternalRefs|{{{tax_id}}}|{{{chromosome}}}|{{{GeneID}}}|{{{Symbol}}}|{{{Synonyms}}}|{{{dbXrefs}}}}}|NA}}</td></tr> | ||
<tr><th scope="row" align="right" valign="top"> | <tr><th scope="row" align="right" valign="top">Associated motifs:</th><td>{{#ifeq:{{#expr:{{#ask:[[Category:Motif]][[Name::~{{{Symbol}}}]]|?#|format=count}}+{{#ask:[[Category:NonRedundantMotifCluster]][[EntrezGene::~{{{GeneID}}}]]|?#|format=count}} }} | 0 | NA | {{#if:{{#ask:[[Category:Motif]][[Name::~{{{Symbol}}}]]}}| {{#ask:[[Category:Motif]][[Name::~{{{Symbol}}}]]|template=Jasparlogo_genepage|link=none}}|}} | ||
<tr><th scope="row" align="right" valign="top">Associated motifs:</th><td> | <span>{{#arraymap:{{{GeneID}}}|,|$| | ||
{{#ask:[[Category: | {{NonRedundantMotifRender|$}} | ||
|? | }}</span>}} | ||
|format= | |||
| | |||
| | |||
}} | |||
{{#ask:[[Category: | |||
| | |||
| | |||
| | |||
| | |||
}} | |||
</td></tr> | </td></tr> | ||
<tr><th scope="row" align="right" valign="top">Transcripton Factor?: </th><td>{{#switch:{{{tf?}}}|yes=[[tf?::Yes]]|[[tf?::No]]}}</td></tr> | |||
</table> | </table> | ||
{{Fontsize|3|TSS regions }} | |||
---- | |||
{{#ask:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|?Short_description|format=ttable|mainlabel=TSS peak ID|class=ffcp_list stripe cell-border order-column compact|limit=20000}} | |||
<br> | |||
<html> | <html> | ||
<script language="javascript" type="text/javascript"> | <script language="javascript" type="text/javascript"> | ||
$(document).ready(function() { | $(document).ready(function() { | ||
// TSS regions list | |||
$('.ffcp_list').DataTable({ | |||
dom: 'Blfrtip', | |||
lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]], | |||
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'] | |||
}); | |||
// hide-show animation for ucsc genome browser view | // hide-show animation for ucsc genome browser view | ||
$("#ucsc_snap_view").hover(function(){ | $("#ucsc_snap_view").hover(function(){ | ||
Line 37: | Line 40: | ||
}); | }); | ||
</script> | </script> | ||
</html> | </html><br> | ||
{{Fontsize|3|View on UCSC genome browser }} | |||
< | ---- | ||
<div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa; overflow:auto;"> | <div id="ucsc_snap_view" style="width:750px; height:30px; border-style:solid; border-width:1px; border-color:#aaaaaa; overflow:auto;"> | ||
Mouse over to see Genome browser image, Click image to go to Genome browser | Mouse over to see Genome browser image, Click image to go to Genome browser | ||
{{#ucsc_gb_link:{{#replace:{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]][[FFCP PHASE1:+]]|link=none|headers=hide|limit=1|searchlabel=}}|FFCP PHASE1:|}}}} | |||
</div><br> | |||
{{Fontsize|3|TSS expression}} | |||
---- | |||
<html> | |||
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.min.js"></script> | |||
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/flot/jquery.flot.min.js"></script> | |||
<style type="text/css" title="currentStyle"> | |||
@import "/5/sstar/rb_js/html5button/datatables.css"; | |||
</style> | |||
</html> | |||
</ | |||
<html> | <html> | ||
< | <style type="text/css"> | ||
.rotate90 { | |||
-webkit-transform: rotate(-90deg); | |||
-moz-transform: rotate(-90deg); | |||
-webkit-transform-origin: 6px 18px; | |||
-moz-transform-origin: 6px 18px; | |||
width:1px; | |||
} | |||
.highlight { background-color: yellow } | .highlight { background-color: yellow } | ||
</style> | |||
<script type="text/javascript"> | <script type="text/javascript"> | ||
$(document).ready(function() { | $(document).ready(function() { | ||
var oTable = $(' | var orderArr; | ||
if($('#gene_exptable')[0].rows[1].cells.length>1){ | |||
orderArr = [[1,'desc']]; | |||
} else { | |||
orderArr = [[0,'asc']]; | |||
} | |||
var oTable = $('#gene_exptable').DataTable({ | |||
dom: 'Bfrti', | |||
scrollY: "300px", | |||
scrollCollapse: true, | |||
order: orderArr, | |||
paging: false, | |||
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'], | |||
columnDefs: [{ orderSequence: [ "asc", "desc" ], type: "html", targets: [ 0 ] }, { orderSequence: [ "desc", "asc" ], targets: [ "_all" ] } ] | |||
}); | }); | ||
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom"); | |||
var data = []; | var data = []; | ||
var plotdata = []; | var plotdata = []; | ||
var slist = []; | |||
// chart checkbox | // chart checkbox | ||
for (var i2=1; i2<$('#gene_exptable thead th').length; i2++){ | |||
for (var i2=1; i2<$( | |||
key2 = i2-1; | key2 = i2-1; | ||
$("#gene_exptable_chart_chkbox").append('<input type="checkbox" name="' + key2 + | |||
$("# | |||
'" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">' | '" checked="checked" id="id' + key2 + '"><label for="id' + key2 + '">' | ||
+ | + $('#gene_exptable thead th:nth-child('+(i2+1)+')').text() + '</label><br/>'); | ||
} | } | ||
$(oTable.settings().column(i2).title).text() | |||
function collectdata(){ | function collectdata(){ | ||
data = []; | |||
// for (i2=1, len2=oTable.settings().columns.length; i2<len2; i2++){ | |||
for (i2=1, len2=$('#gene_exptable thead th').length; i2<len2; i2++){ | |||
var plots = []; | var plots = []; | ||
for ( | for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) { | ||
plots.push([i1,$("# | plots.push([i1,$("#gene_exptable tr")[i1].cells[i2].innerHTML]); | ||
} | } | ||
data.push({"label": | data.push({"label": $('#gene_exptable thead th:nth-child('+(i2+1)+')').text(), "data": plots}); | ||
} | } | ||
slist = []; | |||
for (i1=2, len1=$('#gene_exptable tr').length; i1<len1; i1++) { | |||
slist.push($("#gene_exptable tr")[i1].cells[0].innerHTML); | |||
} | |||
} | } | ||
Line 132: | Line 121: | ||
plotdata = []; | plotdata = []; | ||
$("# | $("#gene_exptable_chart_chkbox").find("input:checked").each(function () { | ||
var key = $(this).attr("name"); | var key = $(this).attr("name"); | ||
plotdata.push(data[$(this).attr("name")]); | plotdata.push(data[$(this).attr("name")]); | ||
}); | }); | ||
var plot1 = $.plot($("# | var plot1 = $.plot($("#gene_exptable_chart"), plotdata, { | ||
yaxis : { axisLabel : 'TPM' }, | yaxis : { axisLabel : 'TPM' }, | ||
lines : { show : false }, | lines : { show : false }, | ||
Line 144: | Line 133: | ||
xaxis : { tickDecimals : 0, show: false }, | xaxis : { tickDecimals : 0, show: false }, | ||
legend: { show: false } | legend: { show: false } | ||
}); | }); | ||
Line 150: | Line 138: | ||
var data_series = plot1.getData(); | var data_series = plot1.getData(); | ||
$("# | $("#gene_exptable_chart_chkbox label").css("background-color", "white"); | ||
$.each(data_series , function(){ | $.each(data_series , function(){ | ||
$("#gene_exptable_chart_chkbox label:contains(" + this.label + ")").css("background-color", this.color); | |||
}); | |||
} | } | ||
collectdata(); | collectdata(); | ||
drawchart(); | if($('#gene_exptable')[0].rows[1].cells.length>1){ | ||
drawchart(); | |||
} | |||
// re-draw chart event | // re-draw chart event | ||
$(window).resize(function() { drawchart(); }); | $(window).resize(function() { drawchart(); }); | ||
$("th").click(function() {collectdata(); drawchart(); } ); | $("th").click(function() {collectdata(); drawchart(); } ); | ||
$("# | $("#gene_exptable_paginate").click(function() {collectdata(); drawchart(); } ); | ||
$('# | $('#gene_exptable').bind('filter', function() { | ||
setTimeout(function(){ | setTimeout(function(){ | ||
collectdata(); drawchart();}, 1000); | collectdata(); drawchart();}, 1000); | ||
} ); | } ); | ||
$('# | $('#gene_exptable_length').change(function() {collectdata(); drawchart(); } ); | ||
$("#gene_exptable_chart_chkbox").find("input").click(function() { drawchart(); }); | |||
$("# | |||
// tooltip function start | // tooltip function start | ||
Line 198: | Line 178: | ||
var previousPoint = null; | var previousPoint = null; | ||
$("# | $("#gene_exptable_chart").bind("plothover", function (event, pos, item) { | ||
$("#x").text(pos.x.toFixed(2)); | $("#x").text(pos.x.toFixed(2)); | ||
$("#y").text(pos.y.toFixed(2)); | $("#y").text(pos.y.toFixed(2)); | ||
Line 206: | Line 186: | ||
$("#tooltip").remove(); | $("#tooltip").remove(); | ||
x = item.datapoint[0].toFixed(0), | |||
y = item.datapoint[1].toFixed(2); | |||
showTooltip(item.pageX, item.pageY, | showTooltip(item.pageX, item.pageY, | ||
" | "Sample: "+slist[item.dataIndex]+"<br>TSS: "+ item.series.label +" TPM: "+y); | ||
} | } | ||
} | } | ||
Line 226: | Line 201: | ||
// clicking point function | // clicking point function | ||
$("# | $("#gene_exptable_chart").bind("plotclick", function (event, pos, item) { | ||
if (item){ | if (item){ | ||
var vdata = Math.round($('# | var vdata = Math.round($('#gene_exptable').height())/item.series.data.length*item.dataIndex; | ||
$('#gene_exptable_wrapper .dataTables_scrollBody').animate({ scrollTop: vdata-150 }, 'slow'); | |||
$('# | $("#gene_exptable_wrapper .dataTables_scrollBody tbody td").removeClass('highlight'); | ||
$('#gene_exptable_wrapper .dataTables_scrollBody tbody tr:eq(' + item.dataIndex+ ') td').addClass('highlight'); | |||
$("# | |||
$('# | |||
} | } | ||
}); | }); | ||
// clicking point function end | // clicking point function end | ||
} ); | } ); | ||
</script> | </script> | ||
<span id="export_tool"></span><br><br> | |||
</html> | </html> | ||
< | <includeonly>{{#gene_exptable:{{#switch:{{{tax_id}}}|9606=Hg19|10090=Mm9}} | ||
|{{#ask:[[Category:FFCP]][[Short description::p1@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p1@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p2@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p2@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p3@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p3@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p4@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p4@{{{Symbol}}},|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p5@{{{Symbol}}}]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p5@{{{Symbol}}},|searchlabel=}} | |||
}}</includeonly> | |||
{{#ask:[[Category:FFCP]][[ | |||
{{# | |||
{{#ask:[[Category:FFCP]][[ | |||
|? | |||
| | |||
|format=list | |||
|headers=hide | |||
| | |||
| | |||
}} | |||
}} | |||
<br><br> | <br><br> | ||
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div> | |||
<div id=" | <html><br><br></html> | ||
<div id=" | <div id="gene_exptable_chart_chkbox" style="float:left;"></div> | ||
<div style="clear:both;"></div> | <div style="clear:both;"></div> | ||
*Click each plot point to find sample in table | |||
<html><style type="text/css"> | |||
< | table.details td { width:35%; background-color: #EAEBFF;} | ||
table.details th { width:15%; background-color: #5A5FB5; color: white;} | |||
</style></html> | |||
{{Fontsize|3|ENCODE TF ChIP-seq peak enrichment analysis }}{{#info:Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br> | |||
<br><br>link to source dataset.<br>[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data] | |||
{{#info: | }} | ||
---- | |||
{{#ifexpr: {{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|format=count}} > 0 | | {{#ifexpr: {{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|format=count}} > 0 | | ||
(#promoters = Number of promoters in the coexpression cluster that have ChIP signal of the TF) | (#promoters = Number of promoters in the coexpression cluster that have ChIP signal of the TF) | ||
Line 294: | Line 242: | ||
<script type="text/javascript"> | <script type="text/javascript"> | ||
$(document).ready(function() { | $(document).ready(function() { | ||
$('#tf_chipseq_enrich'). | var oTable2 = $('#tf_chipseq_enrich').DataTable({ | ||
dom: 'Blfrtip', | |||
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'], | |||
scrollY: "300px", | |||
scrollCollapse: true, | |||
pageLength: 10, | |||
lengthMenu: [[10, 50, -1], [10, 50, "All"]], | |||
}); | order: [[4,'asc']], | ||
columnDefs: [{type: "numeric", targets: [2,3,4], | |||
render: function ( data, type, row, meta ) { | |||
var num =data; | |||
return exp_converter(num,2,"e") ; | |||
} }] | |||
}); | |||
}); | }); | ||
</script> | </script> | ||
</html> | </html>{{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|?Tf_chipseq_enrich_values|intro=<div style="width:100%; float:left;"><table id="tf_chipseq_enrich" class="stripe cell-border order-column compact"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table></div>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|limit=5000|searchlabel=}} | ||
{{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|?Tf_chipseq_enrich_values|intro=<table id="tf_chipseq_enrich"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|limit=5000|searchlabel=}} | |||
|No analysis results for this cluster | |No analysis results for this cluster | ||
}} | }} | ||
<html><br><br></html> | |||
{{Fontsize|3|Details}}{{#info:<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>[ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz human] <br> | |||
[ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Mus_musculus.gene_info.gz mouse] | |||
}} | |||
---- | |||
<table class="details"> | |||
<tr><th scope="row" align="right">GeneID:</th><td>{{#if:{{{GeneID}}}|[[GeneID::{{{GeneID}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">LocusTag:</th><td>{{#if:{{{LocusTag}}}|[[LocusTag::{{{LocusTag}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">chromosome:</th><td>{{#if:{{{chromosome}}}|[[chromosome::{{{chromosome}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">map location:</th><td>{{#show:{{FULLPAGENAME}}|?map_location}}</td></tr> | |||
<tr><th scope="row" align="right">type of gene:</th><td>{{#if:{{{type_of_gene}}}|[[type_of_gene::{{{type_of_gene}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">Symbol from <br>nomenclature authority:</th><td>{{#if:{{{Symbol_from_nomenclature_authority}}}|[[Symbol_from_nomenclature_authority::{{{Symbol_from_nomenclature_authority}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">Full name from <br> nomenclature authority:</th><td>{{#if:{{{Full_name_from_nomenclature_authority}}}|[[Full_name_from_nomenclature_authority::{{{Full_name_from_nomenclature_authority}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">Nomenclature status:</th><td>{{#if:{{{Nomenclature_status}}}|[[Nomenclature_status::{{{Nomenclature_status}}}]]|NA}}</td></tr> | |||
<tr><th scope="row" align="right">Other designations:</th><td>{{#if:{{{Other_designations}}}|{{#show:{{FULLPAGENAME}}|?Other_designations}}|NA}}</td></tr> | |||
<tr><th scope="row" align="right">Modification date:</th><td>{{#if:{{{Modification_date}}}|{{#time: d.m.Y |{{{Modification_date}}}}}|NA}}</td></tr> | |||
</table> | |||
Line 315: | Line 286: | ||
{{#arraymap:{{{map_location}}}|;;|$|{{#set:map_location=$}}}} | {{#arraymap:{{{map_location}}}|;;|$|{{#set:map_location=$}}}} | ||
{{#arraymap:{{{Other_designations}}}|;;|$|{{#set:Other_designations=$}}}} | {{#arraymap:{{{Other_designations}}}|;;|$|{{#set:Other_designations=$}}}} | ||
[[Category:EntrezGene]] | [[Category:EntrezGene]] | ||
{{#set:GeneID={{{GeneID}}}}} | |||
< | {{#set:LocusTag ={{{LocusTag}}}}} | ||
{{#set:chromosome={{{chromosome}}}}} | |||
{{#set:type_of_gene={{{type_of_gene}}}}} | |||
{{#set:map_location={{{map_location}}}}} | |||
{{#set:Symbol_from_nomenclature_authority={{{Symbol_from_nomenclature_authority}}}}} | |||
{{#set:Full_name_from_nomenclature_authority={{{Full_name_from_nomenclature_authority}}}}} | |||
{{#set:Nomenclature_status={{{Nomenclature_status}}}}} | |||
{{#set:Other_designations={{{Other_designations}}}}} | |||
<!-- | |||
{{#set:Modification_date={{{Modification_date}}}}} | |||
--> | |||
<!--{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]|?name|format=count}}{{#if:{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]]}}|{{#ask:[[Category:SwissregulonMotif]][[EntrezGene::~{{{GeneID}}}]] | |||
|?name | |||
|format=template | |||
|link=none | |||
|template=SwissregulonResult_withSeqLogo | |||
|sep= | |||
}}| | |||
}} | |||
<span><br><br> | |||
--> |
Revision as of 15:01, 14 November 2019
Symbol: | {{{Symbol}}} | ||
---|---|---|---|
Description: | {{{description}}} | ||
Synonyms: | |||
Species: | NA | ||
Xrefs: |
| ||
Associated motifs: | NA | ||
Transcripton Factor?: | No |
TSS regions
View on UCSC genome browser
TSS expression
- Click each plot point to find sample in table
ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data
No analysis results for this cluster
Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse
GeneID: | {{{GeneID}}} |
---|---|
LocusTag: | {{{LocusTag}}} |
chromosome: | {{{chromosome}}} |
map location: | |
type of gene: | {{{type_of_gene}}} |
Symbol from nomenclature authority: | {{{Symbol_from_nomenclature_authority}}} |
Full name from nomenclature authority: | {{{Full_name_from_nomenclature_authority}}} |
Nomenclature status: | {{{Nomenclature_status}}} |
Other designations: | |
Modification date: | Error: Invalid time. |