Template:F5samples: Difference between revisions
From FANTOM5_SSTAR
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{{#if: {{{ancestors_in_cell_lineage_facet}}} | | {{#if: {{{ancestors_in_cell_lineage_facet}}} | | ||
<div style="float:left;"> | <div style="float:left;"> | ||
<b>Cell type</b> | |||
{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | {{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | </div> | ||
| Line 259: | Line 255: | ||
{{#if: {{{ancestors_in_disease_facet}}} | | {{#if: {{{ancestors_in_disease_facet}}} | | ||
<div style="float:left;"> | <div style="float:left;"> | ||
<b>Disease</b> | |||
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | {{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | ||
</div> | |||
}} | |||
{{#if: {{{ancestors_in_anatomy_facet}}} | | |||
<div style="float:left;"> | |||
<b>Anatomy</b> | |||
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | |||
</div> | |||
}} | |||
{{#if: {{{ancestors_in_anatomy_ff}}} | | |||
<div style="float:left;"> | |||
<b>FANTOM5</b> | |||
{{#arraymap:{{{ancestors_in_anatomy_ff}}}|,|$|{{#set:ancestors_in_anatomy_ff=$}}FF:{{#ask:[[id::$]]|?name=|format=list}}|<br>}} | |||
</div> | </div> | ||
}} | }} | ||
Revision as of 14:09, 5 July 2012
| Name: | {{{name}}} |
|---|---|
| Species: | {{{sample_species}}} |
| Genomic View: | zenbu , UCSC |
Details
Transcriptome profiling
| hCAGE | {{{profile_hcage}}} |
|---|---|
| RNA-seq | {{{profile_rnaseq}}} |
| smallRNA seq | {{{profile_srnaseq}}} |
| nanoCAGEscan | {{{profile_cagescan}}} |
Sample info
| strain | {{{sample_strain}}} |
|---|---|
| tissue | {{{sample_tissue}}} |
| dev_stage | {{{sample_dev_stage}}} |
| sex | {{{sample_sex}}} |
| age | {{{sample_age}}} |
| ethnicity | {{{sample_ethnicity}}} |
| cell_type | {{{sample_cell_type}}} |
| cell_line | {{{sample_cell_line}}} |
| collaboration | {{{sample_collaboration}}} |
| Experimental condition | {{{sample_experimental_condition}}} |
| disease | {{{sample_disease}}} |
| cell_lot | {{{sample_cell_lot}}} |
| cell_catalog | {{{sample_cell_catalog}}} |
| company | {{{sample_company}}} |
| donor(cell lot) | {{{sample_donor(cell lot)}}} |
| Note | {{{sample_note}}} |
RNA info
| sample_id | {{{sample_id}}} |
|---|---|
| tube_id | {{{rna_tube_id}}} |
| box | {{{rna_box}}} |
| position | {{{rna_position}}} |
| lot_number | {{{rna_lot_number}}} |
| catalog_number | {{{rna_catalog_number}}} |
| RIN | {{{rna_rin}}} |
| OD260/230 | {{{rna_od260/230}}} |
| OD260/280 | {{{rna_od260/280}}} |
| sample_type | {{{rna_sample_type}}} |
| extraction_protocol | {{{rna_extraction_protocol}}} |
| weight_ug | {{{rna_weight_ug}}} |
| concentration | {{{rna_concentration}}} |
Parent ontology
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestors in FF ontology
Cell type CL:
Disease Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID:
Anatomy UBERON:
FANTOM5 Property "Ancestors in anatomy ff" (as page type) with input value "{{{ancestors_in_anatomy_ff}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.FF:
