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<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>


</html>
</html>
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$(document).ready(function() {
$(document).ready(function() {
$('#ffcp_tf_enrichscore').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="ffcp_tf_enrichscore_cont"></table>' );
$('#ffcp_tf_enrichscore').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="ffcp_tf_enrichscore_cont"></table>' );
$('#ffcp_tf_enrichscore_cont').dataTable( {
var tf_enrich_tableex_obj = $('#ffcp_tf_enrichscore_cont').dataTable( {
"sDom": '<"toolbar">frtip',
"sScrollY": "300px",
"sScrollY": "300px",
"bPaginate": false,
"bPaginate": false,
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"aaSorting": [[ 1, "desc" ]]
"aaSorting": [[ 1, "desc" ]]
} );
} );
$("div.toolbar").html('<b>TF expression and enrichment</b>');
 
$("div.toolbar").css('border-width', '0 0 2px 0');
var tf_enrich_tableex_objtool = new TableTools( tf_enrich_tableex_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "xls", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
$("div.toolbar").css('border-color', '#6495ED');
 
$("div.toolbar").css('border-style', 'solid');
$('#tf_enrich_export_button').before( tf_enrich_tableex_objtool.dom.container );
 
} );
} );
</script>
</script>
<!-- tf enrich table: end-->
<!-- tf enrich table: end-->
 
<div id="tf_enrich_export_button"></div>
<div id="ffcp_tf_enrichscore"></div>
<div id="ffcp_tf_enrichscore"></div>
</html>
</html>

Revision as of 10:57, 6 September 2012


Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC









Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in ontology (non-development)

Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji

CL: Cell type

DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

UBERON: Anatomy

FF: FANTOM5

Ancestors in ontology (development)

Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji



Related MacroAPE_1083 Motifs

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon This sample isn't target for the analysis