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{{#ask:[[Macroape_1083_sample_pvalue_ffid::{{PAGENAME}}]]
{{#ask:[[Macroape_1083_sample_pvalue_ffid::{{PAGENAME}}]]
|?Macroape_1083_sample_pvalue_pvalue|format=template|template=Doublecolumn_to_tbrow|intro=<html><table class="macroape_p_sample"><thead><tr><th>Motif name</th><th>P-value</th></tr></thead><tbody></html>|outro=<html></tbody></table></html>|limit=1100|searchlabel=|default=This sample isn't target for the analysis}}
|?Macroape_1083_sample_pvalue_pvalue|format=template|template=Doublecolumn_to_tbrow|intro=<html><table class="macroape_p_sample"><thead><tr><th>Motif name</th><th>P-value</th></tr></thead><tbody></html>|outro=<html></tbody></table></html>|limit=1100|searchlabel=|default=This sample isn't target for the analysis}}
== Repeat Enrichment ==
{{#info: <br>Analyst: }}
{{#if: {{#pos:{{{repeat_enrich_byname}}}|,}} |
<html>
<script type="text/javascript">
$(document).ready(function() {
var data = [];
var repnames = 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R37B','LTR38','LTR38-int','LTR38B','LTR39','LTR39-int','LTR3A','LTR3B','LTR3B_','LTR4','LTR40A1','LTR40a','LTR40b','LTR40c','LTR41','LTR41,LTR41B','LTR41B','LTR42','LTR43','LTR43-int','LTR43B','LTR44','LTR45B','LTR45B,LTR72B','LTR45C','LTR46','LTR46-int','LTR47A','LTR47B','LTR48','LTR48B','LTR48B,LTR49-int','LTR49','LTR49,MSTB2','LTR49-int','LTR50','LTR51','LTR52','LTR52-int','LTR53','LTR54','LTR54B','LTR55','LTR56','LTR57','LTR57-int','LTR58','LTR5A','LTR5B','LTR5_Hs','LTR61','LTR62','LTR64','LTR65','LTR66','LTR67B','LTR67B,LTR67B','LTR67B,MER5A','LTR67B,MLT1J','LTR69','LTR6A','LTR6B','LTR7','LTR7,MER4C','LTR71A','LTR71B','LTR72','LTR72B','LTR73','LTR75','LTR75B','LTR75_1','LTR76','LTR77','LTR78','LTR78B','LTR79','LTR79,LTR79','LTR7B','LTR7C','LTR7Y','LTR8','LTR80B','LTR81AB','LTR81B','LTR81C','LTR82A','LTR82B','LTR83','LTR84a','LTR84b','LTR84b,LTR84b','LTR85a','LTR85b','LTR85c','LTR86A1','LTR86B2','LTR87','LTR88a','LTR88b','LTR88c','LTR89','LTR8A','LTR9','LTR90A','LTR90B','LTR9B','Looper','MADE1','MADE2','MARNA','MER101','MER101-int','MER101B','MER102a','MER102b','MER102c','MER103C','MER104','MER105','MER106A','MER106B','MER110','MER110-int','MER110A','MER112','MER113','MER113A','MER115','MER117','MER119','MER119,MER119','MER11A','MER11C','MER11D','MER121','MER125','MER126','MER130','MER131','MER135','MER1A','MER1B','MER2','MER20','MER20,MER5A1','MER20B','MER21-int','MER21A','MER21A,MER39','MER21B','MER21C','MER2B','MER3','MER3,MLT1J','MER30','MER30B','MER31-int','MER31-int,MER31-int','MER31A','MER31B','MER33','MER34-int','MER34A','MER34A1','MER34B','MER34B-int','MER34B-int,MER34B-int','MER34C','MER34C2','MER34C_','MER39','MER39B','MER4-int','MER41-int','MER41A','MER41B','MER41C','MER41D','MER41E','MER41G','MER44A','MER44B','MER44C','MER44D','MER45A','MER45B','MER45C','MER46C','MER47A','MER47B','MER47C','MER48','MER49','MER4A','MER4A1','MER4A1_','MER4B','MER4B-int','MER4B-int,U3','MER4C','MER4D','MER4D0','MER4D1','MER4E','MER4E1','MER50','MER50,MER50','MER50-int','MER50B','MER50C','MER51-int','MER51A','MER51B','MER51C','MER51D','MER51E','MER52-int','MER52A','MER52A,MER52A','MER52C','MER52D','MER53','MER54A','MER54B','MER57-int','MER57A-int','MER57A1','MER57A1,MER57D','MER57B1','MER57B2','MER57C1','MER57C2','MER57D','MER57E1','MER57E2','MER57E3','MER57F','MER58A','MER58B','MER58C','MER58D','MER5A','MER5A1','MER5B','MER5B,MIRb','MER5C','MER5C1','MER6','MER61-int','MER61A','MER61B','MER61C','MER61D','MER61E','MER61E,MLT2B1','MER61F','MER63A','MER63B','MER63C','MER63D','MER65-int','MER65A','MER65B','MER65C','MER65D','MER66-int','MER66A','MER66B','MER66C','MER66D','MER67A','MER67B','MER67C','MER67D','MER68','MER68-int','MER68B','MER6A','MER6B','MER70-int','MER70A','MER70B','MER70C','MER72','MER73','MER74A','MER74A,MER74A','MER74B','MER74C','MER75A','MER76','MER77','MER77B','MER8','MER81','MER82','MER83','MER83A-int','MER83B','MER83C','MER84','MER84-int','MER85','MER87B','MER89','MER89,MER89','MER90','MER90a','MER91A','MER91B','MER91C','MER92A','MER92B','MER92C','MER94','MER94B','MER95','MER96','MER96B','MER97a','MER99','MER9a2','MIR','MIR,MIRc','MIR,T-rich','MIR3','MIR3,MIRb','MIR3,MLT1C','MIRb','MIRc','MLT-int','MLT1-int','MLT1A','MLT1A0','MLT1A0-int','MLT1A1','MLT1A1-int','MLT1B','MLT1B-int','MLT1C','MLT1C-int','MLT1D','MLT1D-int','MLT1E','MLT1E1','MLT1E1A','MLT1E1A,U4','MLT1E1A-int','MLT1E2','MLT1E3','MLT1E3-int','MLT1F','MLT1F,THE1B','MLT1F-int','MLT1F1','MLT1F2','MLT1F2-int','MLT1G','MLT1G-int','MLT1G1','MLT1G1,MSTA','MLT1G3','MLT1G3-int','MLT1H','MLT1H-int','MLT1H1','MLT1H2','MLT1I','MLT1I-int','MLT1J','MLT1J-int','MLT1J1','MLT1J1-int','MLT1J2','MLT1J2-int','MLT1K','MLT1L','MLT1M','MLT1N2','MLT2A1','MLT2A2','MLT2B1','MLT2B2','MLT2B3','MLT2B4','MLT2B5','MLT2C1','MLT2C2','MLT2D','MLT2E','MLT2F','MSR1','MSTA','MSTA-int','MSTB','MSTB-int','MSTB1','MSTB2','MSTB2-int','MSTC','MSTD','MSTD-int','MamGyp-int','MamGypLTR1a','MamGypLTR1b','MamGypLTR1c','MamGypLTR1d','MamGypLTR2c','MamGypLTR3','MamRep1161','MamRep137','MamRep1527','MamRep1879','MamRep38','MamRep4096','MamRep434','MamRep488','MamRep564','MamRep605','MamSINE1','Merlin1_HS','ORSL','ORSL-2a','ORSL-2b','PABL_A','PABL_A-int','PABL_B','PABL_B-int','PRIMA4-int','PRIMA41-int','PRIMA4_LTR','Plat_L3','PrimLTR79','REP522','Ricksha','Ricksha_0','Ricksha_c','SAR','SATR1','SST1','SSU-rRNA_Hsa','SUBTEL_sa','SVA_B','SVA_C','SVA_D','SVA_F','T-rich','TAR1','THE1-int','THE1A','THE1A-int','THE1B','THE1B-int','THE1C','THE1D','THE1D-int','Tigger1','Tigger1,U1','Tigger10','Tigger11a','Tigger12','Tigger12A','Tigger12c','Tigger13a','Tigger14a','Tigger15a','Tigger16a','Tigger16b','Tigger1a_Art','Tigger2','Tigger2a','Tigger2b_Pri','Tigger3','Tigger3,Tigger3','Tigger3a','Tigger3b','Tigger3c','Tigger4','Tigger4,Tigger4','Tigger4a','Tigger5','Tigger6a','Tigger6b','Tigger7','Tigger8','Tigger9a','Tigger9b','U1','U13','U13_','U14','U17','U2','U3','U4','U5','U6','U7','U8','UCON14','UCON2','UCON26','UCON29','UCON31','X3_LINE','X6A_LINE','X6B_LINE','X7A_LINE','X7B_LINE','X7C_LINE','X9_LINE','Zaphod','Zaphod3','polypurine','polypyrimidine','tRNA-Ala-GCY','tRNA-Ala-GCY_','tRNA-Arg-AGG','tRNA-Asn-AAC','tRNA-Asn-AAT','tRNA-Gln-CAA_','tRNA-Gly-GGA','tRNA-Leu-TTA','tRNA-Leu-TTA(m)','tRNA-Met-i','tRNA-Pro-CCA','tRNA-Ser-AGY','tRNA-Ser-TCA(m)'];
var values = [</html>{{{repeat_enrich_byname}}}<html>];
for(i1=0;i1<repnames.length;i1++){
//pval = pvals[i1].split(";");
data.push([repnames[i1],values[i1]]);
}
    $('#repeat_enrich_byname_table').dataTable({
//"aaData": [["one", 1],["two", 3],["three", 0]],
"sScrollY": "300px",
"bScrollCollapse": true,
"bPaginate": false,
"bFilter": false,
"bInfo": false,
"aaData": data,
"aoColumns": [{ "sTitle": "Repeat sequence name",  "bSortable": false },{ "sTitle": "Enrichment score", "sType": "numeric" }],
"aaSorting": [[ 1, "asc" ]],
});
});
</script>
<table id="repeat_enrich_byname_table"></table>
</html>
|no result for this sample
}}





Revision as of 12:53, 11 September 2012


Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC









Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in ontology (non-development)

Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji

CL: Cell type

DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

UBERON: Anatomy

FF: FANTOM5

Ancestors in ontology (development)

Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji



Related MacroAPE_1083 Motifs

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon This sample isn't target for the analysis


Repeat Enrichment

<br>Analyst: no result for this sample