Template:F5samples: Difference between revisions
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== Related Novel Motifs == | |||
{{#info:The values shown are the p-values of novel motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon}} | |||
<html> | |||
<script type="text/javascript"> | |||
$(document).ready(function() { | |||
$('.novel_motif_pval').dataTable({ | |||
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{{#arraymap:{{#explode:{{{profile_hcage}}}|,|0}}|&|$ | |||
|<h3>$</h3><br>{{#ask:[[novel_motifs_mouse_sample_pval_ffid::{{PAGENAME}}{{#replace:$|CNhs|.}}]]|mainlabel=Motif page name|?novel_motifs_mouse_sample_pval_pval=P-value|format=ttable|limit=1100|searchlabel=|class=novel_motif_pval|searchlabel=|default=This sample isn't target for the analysis}} | |||
|<br><br> | |||
}} | |||
== Related MacroAPE_1083 Motifs == | == Related MacroAPE_1083 Motifs == | ||
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</html> | </html> | ||
{{#ask:[[Macroape_1083_sample_pvalue_ffid::{{PAGENAME}}]]|mainlabel=Motif page name|?Macroape_1083_sample_pvalue_pvalue=P-value|format=ttable|limit=1100|searchlabel=|class=macroape_p_sample|default=This sample isn't target for the analysis}} | {{#ask:[[Macroape_1083_sample_pvalue_ffid::{{PAGENAME}}]]|mainlabel=Motif page name|?Macroape_1083_sample_pvalue_pvalue=P-value|format=ttable|limit=1100|searchlabel=|class=macroape_p_sample|default=This sample isn't target for the analysis}} | ||
== Repeat Enrichment == | == Repeat Enrichment == | ||
Revision as of 16:49, 21 January 2013
| Name: | {{{name}}} |
|---|---|
| Species: | {{{sample_species}}} |
| Genomic View: | zenbu , UCSC |
Details
Transcriptome profiling
| hCAGE | {{{profile_hcage}}} |
|---|---|
| RNA-seq | {{{profile_rnaseq}}} |
| smallRNA seq | {{{profile_srnaseq}}} |
| nanoCAGEscan | {{{profile_cagescan}}} |
Sample info
| strain | {{{sample_strain}}} |
|---|---|
| tissue | {{{sample_tissue}}} |
| dev_stage | {{{sample_dev_stage}}} |
| sex | {{{sample_sex}}} |
| age | {{{sample_age}}} |
| ethnicity | {{{sample_ethnicity}}} |
| cell_type | {{{sample_cell_type}}} |
| cell_line | {{{sample_cell_line}}} |
| collaboration | {{{sample_collaboration}}} |
| Experimental condition | {{{sample_experimental_condition}}} |
| disease | {{{sample_disease}}} |
| cell_lot | {{{sample_cell_lot}}} |
| cell_catalog | {{{sample_cell_catalog}}} |
| company | {{{sample_company}}} |
| donor(cell lot) | {{{sample_donor(cell lot)}}} |
| Note | {{{sample_note}}} |
RNA info
| sample_id | {{{sample_id}}} |
|---|---|
| tube_id | {{{rna_tube_id}}} |
| box | {{{rna_box}}} |
| position | {{{rna_position}}} |
| lot_number | {{{rna_lot_number}}} |
| catalog_number | {{{rna_catalog_number}}} |
| RIN | {{{rna_rin}}} |
| OD260/230 | {{{rna_od260/230}}} |
| OD260/280 | {{{rna_od260/280}}} |
| sample_type | {{{rna_sample_type}}} |
| extraction_protocol | {{{rna_extraction_protocol}}} |
| weight_ug | {{{rna_weight_ug}}} |
| concentration | {{{rna_concentration}}} |
Parent ontology
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestors in ontology (non-development)
Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji
CL: Cell type
DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
UBERON: Anatomy
FF: FANTOM5
Ancestors in ontology (development)
Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji
De novo Motif
<b>Homer de novo Motifs</b><br>Analyst: Michael Rehli
Related Novel Motifs
The values shown are the p-values of novel motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon
{{{profile_hcage}}}
This sample isn't target for the analysis
Related MacroAPE_1083 Motifs
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon This sample isn't target for the analysis
Repeat Enrichment
<br>Analyst:
no result for this sample
Relative expression of the co-expression cluster
<br>Analyst:
