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Difference between revisions of "Template:F5samples"

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{{#arraymap:{{{ancestors_in_anatomy_facet|}}}|,|x|{{#set:ancestors_in_anatomy_facet=x}}}}
 
{{#arraymap:{{{ancestors_in_anatomy_facet|}}}|,|x|{{#set:ancestors_in_anatomy_facet=x}}}}
  
{{#if: {{{top_motifs}}} |
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{{#if: {{{top_motifs}}} |== Top Motifs =={{TopMotifsInMaraPhase1|top_motifs={{top_motifs}}}}}|}}
== Top Motifs ==
 
{{TopMotifsInMaraPhase1
 
|top_motifs={{{top_motifs}}}
 
}}
 
|}}
 
  
  

Revision as of 05:54, 15 February 2012

{{{name}}}

{{{id}}}
name {{{name}}}
species {{{sample_species}}}
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}



Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )



Specific TFs

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Specific genes

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Specific TSS regions

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Specific motifs

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De-novo motifs

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Parent Ontologies









== Top Motifs =={{#top_motifs_table01: Template:Top motifs}}}