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{{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | http://upload.wikimedia.org/wikipedia/commons/thumb/1/11/Uomo_Vitruviano.jpg/86px-Uomo_Vitruviano.jpg | }}
 
{{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | http://upload.wikimedia.org/wikipedia/commons/thumb/1/11/Uomo_Vitruviano.jpg/86px-Uomo_Vitruviano.jpg | }}
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{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | http://genome.ucsc.edu/images/Gallus_gallus.jpg | }}
 
{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | http://genome.ucsc.edu/images/Gallus_gallus.jpg | }}
 
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[[Category:FF_Ontology]]
 
[[Category:FF_Ontology]]

Revision as of 16:58, 22 February 2012

{{{name}}}

{{{id}}}
name {{{name}}}
species {{{sample_species}}}
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}



Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )



Specific TFs

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  • ...
  • ...

Specific genes

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  • ...
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Specific TSS regions

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  • ...
  • ...

Specific motifs

  • ...
  • ...
  • ...

De-novo motifs

  • ...
  • ...
  • ...

Parent Ontologies









Top Motifs

{{#top_motifs_table01: {{{top_motifs}}}}}