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<tr><th scope="row" align="right"> [[Property:profile_srnaseq|smallRNA seq]] </th><td> [[profile_srnaseq::{{{profile_srnaseq}}}]]</td>
<tr><th scope="row" align="right"> [[Property:profile_srnaseq|smallRNA seq]] </th><td> [[profile_srnaseq::{{{profile_srnaseq}}}]]</td>
<tr><th scope="row" align="right"> [[Property:profile_cagescan|nanoCAGEscan]]</th><td> [[profile_cagescan::{{{profile_cagescan}}}]]
<tr><th scope="row" align="right"> [[Property:profile_cagescan|nanoCAGEscan]]</th><td> [[profile_cagescan::{{{profile_cagescan}}}]]
</table>


=== Sample info ===
<table>
<tr><th scope="row" align="right"> [[Property:sample_strain|strain]] </th><td> [[sample_strain::{{{sample_strain}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_strain|strain]] </th><td> [[sample_strain::{{{sample_strain}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_tissue|tissue]]</th><td> [[sample_tissue::{{{sample_tissue}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_tissue|tissue]]</th><td> [[sample_tissue::{{{sample_tissue}}}]]</td>
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</table>
</table>


=== RNA info ===
<table>
<table>
<tr><th scope="row" align="right"> [[Property:sample_id|sample_id]] </th><td>[[sample_id::{{{sample_id}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_id|sample_id]] </th><td>[[sample_id::{{{sample_id}}}]]</td>
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</table>
</table>


{|style="background-color: #F5F5F5; width:25em; float: right;"
|-
| colspan="2" style="text-align: center;  background-color: skyblue;" |Transcriptome
|-
! Genomic view
| [https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Experiments;search={{#replace:{{{id}}}|FF:|}} zenbu] , [https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgTracks?db={{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | hg19 | }}{{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | mm9 | }}{{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) |  rn4 | }}{{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | canFam2 | }}{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | galGal3 | }}&tsCurTab=advancedTab&hgt_tsPage=&hgt_tSearch=search&tsName={{#replace:{{{id}}}|FF:|}} UCSC]
|-
! [[Property:profile_hcage|hCAGE]]
| [[profile_hcage::{{{profile_hcage}}}]]
|-
! [[Property:profile_rnaseq|RNA-seq]]
| [[profile_rnaseq::{{{profile_rnaseq}}}]]
|-
! [[Property:profile_srnaseq|smallRNA seq]]
| [[profile_srnaseq::{{{profile_srnaseq}}}]]
|-
! [[Property:profile_cagescan|nanoCAGEscan]]
| [[profile_cagescan::{{{profile_cagescan}}}]]
|-
| colspan="2" style="text-align: center;  background-color: skyblue;" |sample detail
|-
! [[Property:sample_species|species]]
| [[sample_species::{{{sample_species}}}]]
|-
! [[Property:sample_strain|strain]]
| [[sample_strain::{{{sample_strain}}}]]
|-
! [[Property:sample_tissue|tissue]]
| [[sample_tissue::{{{sample_tissue}}}]]
|-
! [[Property:sample_dev_stage|dev_stage]]
| [[sample_dev_stage::{{{sample_dev_stage}}}]]
|-
! [[Property:sample_sex|sex]]
| [[sample_sex::{{{sample_sex}}}]]
|-
! [[Property:sample_age|age]]
| [[sample_age::{{{sample_age}}}]]
|-
! [[Property:sample_ethnicity|ethnicity]]
| [[sample_ethnicity::{{{sample_ethnicity}}}]]
|-
! [[Property:sample_cell_type|cell_type]]
| [[sample_cell_type::{{{sample_cell_type}}}]]
|-
! [[Property:sample_cell_line|cell_line]]
| [[sample_cell_line::{{{sample_cell_line}}}]]
|-
! [[Property:sample_collaboration|collaboration]]
| [[sample_collaboration::{{{sample_collaboration}}}]]
|-
! [[Property:sample_experimental_condition|Experimental condition]]
| [[sample_experimental_condition::{{{sample_experimental_condition}}}]]
|-
! [[Property:sample_disease|disease]]
| [[sample_disease::{{{sample_disease}}}]]
|-
! [[Property:sample_cell_lot|cell_lot]]
| [[sample_cell_lot::{{{sample_cell_lot}}}]]
|-
! [[Property:sample_cell_catalog|cell_catalog]]
| [[sample_cell_catalog::{{{sample_cell_catalog}}}]]
|-
! [[Property:sample_company|company]]
| [[sample_company::{{{sample_company}}}]]
|-
! [[Property:sample_donor(cell lot)|donor(cell lot)]]
| [[sample_donor(cell lot)::{{{sample_donor(cell lot)}}}]]
|-
! [[Property:sample_note|Note]]
| [[sample_note::{{{sample_note}}}]]
|-
| colspan="2" style="text-align: center;  background-color: skyblue;" |RNA info
|-
! [[Property:sample_id|sample_id]]
| [[sample_id::{{{sample_id}}}]]
|-
! [[Property:rna_tube_id|tube_id]]
| [[rna_tube_id::{{{rna_tube_id}}}]]
|-
! [[Property:rna_box|box]]
| [[rna_box::{{{rna_box}}}]]
|-
! [[Property:rna_position|position]]
| [[rna_position::{{{rna_position}}}]]
|-
! [[Property:rna_lot_number|lot_number]]
| [[rna_lot_number::{{{rna_lot_number}}}]]
|-
! [[Property:rna_catalog_number|catalog_number]]
| [[rna_catalog_number::{{{rna_catalog_number}}}]]
|-
! [[Property:rna_rin|RIN]]
| [[rna_rin::{{{rna_rin}}}]]
|-
! [[Property:rna_od260/230|OD260/230]]
| [[rna_od260/230::{{{rna_od260/230}}}]]
|-
! [[Property:rna_od260/280|OD260/280]]
| [[rna_od260/280::{{{rna_od260/280}}}]]
|-
! [[Property:rna_sample_type|sample_type]]
| [[rna_sample_type::{{{rna_sample_type}}}]]
|-
! [[Property:rna_extraction_protocol|extraction_protocol]]
| [[rna_extraction_protocol::{{{rna_extraction_protocol}}}]]
|-
! [[Property:rna_weight_ug|weight_ug]]
| [[rna_weight_ug::{{{rna_weight_ug}}}]]
|-
! [[Property:rna_concentration|concentration]]
| [[rna_concentration::{{{rna_concentration}}}]]
|}


== Ancestors in FF ontology ==
== Ancestors in FF ontology ==

Revision as of 02:32, 4 April 2012

Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC



Top activities with MARA

{{#top_motifs_table01: {{{top_motifs}}}}}


Details

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}

RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}


Ancestors in FF ontology

AnatomyCell lineage Disease

UBERON:

CL:

Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: