Personal tools

Difference between revisions of "Template:F5samples"

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{|style="background-color: #F5F5F5; width:25em; float: right;" ! colspan="2" style="text-align: center; background-color: skyblue;" | [[id::{{{id}}}]] |- ! [[Property:name|n...")
 
Line 107: Line 107:
 
|-
 
|-
 
! [[Property:rna_extraction_protocol|extraction_protocol]]
 
! [[Property:rna_extraction_protocol|extraction_protocol]]
| [[rna_extraction_protocol::{{{extraction_protocol}}}]]
+
| [[rna_extraction_protocol::{{{rna_extraction_protocol}}}]]
 
|-
 
|-
 
! [[Property:rna_weight_ug|weight_ug]]
 
! [[Property:rna_weight_ug|weight_ug]]
Line 113: Line 113:
 
|-
 
|-
 
! [[Property:rna_concentration|concentration]]
 
! [[Property:rna_concentration|concentration]]
| [[rna_concentration::{{{concentration}}}]]
+
| [[rna_concentration::{{{rna_concentration}}}]]
 
|}
 
|}
  

Revision as of 06:27, 25 January 2012

{{{id}}}
name {{{name}}}
species {{{sample_species}}}
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}


{{{name}}}. Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )



Specific TFs

  • ...
  • ...
  • ...

Specific genes

  • ...
  • ...
  • ...

Specific TSS regions

  • ...
  • ...
  • ...

Specific motifs

  • ...
  • ...
  • ...

De-novo motifs

  • ...
  • ...
  • ...

Parent Ontologies