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Template:F5samples

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{{{id}}}
name {{{name}}}
species {{{sample_species}}}
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}


{{{name}}}. Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )



Specific TFs

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Specific genes

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  • ...
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Specific TSS regions

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Specific motifs

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De-novo motifs

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Parent Ontologies

yes yes




Template:F5samples F5samples


 Ancestors in anatomy facet
10005-101B1
AoSMC response to FGF2
AoSMC response to IL1b
BMM TB activation IFNg
BMM TB activation IL13
BMM TB activation IL4
BMM TB activation IL4-IL13
BMM TB infection control
Broken/CanFam3::chr10:1130447..1130460,-
Broken/CanFam3::chr10:1130463..1130478,-
Broken/CanFam3::chr10:1130955..1130959,-
Broken/CanFam3::chr10:1131842..1131852,-
Broken/CanFam3::chr10:1131864..1131875,-
Broken/CanFam3::chr10:1131887..1131911,-
Broken/CanFam3::chr10:1131937..1131939,-
Broken/CanFam3::chr10:11346470..11346472,+
Broken/CanFam3::chr10:11364446..11364455,+
Broken/CanFam3::chr10:11364457..11364487,+
Broken/CanFam3::chr10:1141857..1141859,+
Broken/CanFam3::chr10:11445838..11445841,+
Broken/CanFam3::chr10:11445845..11445899,+
Broken/CanFam3::chr10:11560359..11560396,+
Broken/CanFam3::chr10:11673706..11673720,+
Broken/CanFam3::chr10:11673727..11673743,+
Broken/CanFam3::chr10:117029..117056,+
Broken/CanFam3::chr10:1191907..1191918,-
Broken/CanFam3::chr10:1193113..1193119,-
Broken/CanFam3::chr10:1193134..1193136,-
Broken/CanFam3::chr10:1193142..1193150,-
Broken/CanFam3::chr10:1193151..1193168,-
Broken/CanFam3::chr10:1194250..1194294,-
Broken/CanFam3::chr10:1200622..1200624,-
Broken/CanFam3::chr10:12057283..12057300,-
Broken/CanFam3::chr10:12057349..12057367,+
Broken/CanFam3::chr10:120909..120919,+
Broken/CanFam3::chr10:120961..120971,+
Broken/CanFam3::chr10:120973..120983,+
Broken/CanFam3::chr10:1226647..1226660,+
Broken/CanFam3::chr10:1245961..1245972,-
Broken/CanFam3::chr10:1245982..1245992,-
Broken/CanFam3::chr10:1246977..1246994,-
Broken/CanFam3::chr10:12482460..12482470,-
Broken/CanFam3::chr10:12482552..12482576,-
Broken/CanFam3::chr10:12482697..12482704,-
Broken/CanFam3::chr10:1259589..1259626,-
Broken/CanFam3::chr10:1259708..1259756,+
Broken/CanFam3::chr10:1260223..1260237,+
Broken/CanFam3::chr10:1260239..1260276,+
Broken/CanFam3::chr10:1260382..1260410,+
Broken/CanFam3::chr10:1260414..1260429,+
... further results