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UBERON:0000019

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Name:camera-type eye
Namespace:FANTOM
Definition:"The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid // " [GO:0043010, UBERON:cjm]
Xrefs:
links:

AAO:0010340
BTO:0004688
EHDAA2:0000484
EHDAA:936
EMAPA:16198
FMA:54448
MA:0000261
ncithesaurus:Eye
NIF_GrossAnatomy:birnlex_1169
OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
SCTID:181143004
TAO:0000107
VHOG:0000275
XAO:0000179

ZFA:0000107
Synonyms: "camera-type eye plus associated structures" RELATED []
"eye" BROAD [FMA:54448]
"orbital part of face" EXACT [FMA:54448]
"orbital region" EXACT [FMA:54448]
"regio orbitalis" EXACT [FMA:54448, FMA:TA]
"vertebrate eye" NARROW []
Comments:AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this
Alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000047(simple eye),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0015212(lateral structure)
develops_from:UBERON:0003072(optic cup)
part_of:UBERON:0004088(ocular region)



Children

derives from:FF:0010054 (human eye - fetal sample)
part of:UBERON:0002203 (vasculature of eye),UBERON:0003269 (skeletal muscle tissue of eye),UBERON:0003314 (eye mesenchyme),UBERON:0004277 (eye muscle),UBERON:0005427 (corneal primordium),UBERON:0005606 (hyaloid cavity),UBERON:0005908 (conjunctival sac),UBERON:0005969 (reticulum trabeculare),UBERON:0006311 (chamber of eyeball),UBERON:0006312 (ocular refractive media),UBERON:0010230 (eyeball of camera-type eye),UBERON:0010409 (eye surface),UBERON:0015808 (eye epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000019 (camera-type eye), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_626a90ad5c2d1952a7320859cfd962b4p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_626a90ad5c2d1952a7320859cfd962b4p8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_626a90ad5c2d1952a7320859cfd962b4p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_626a90ad5c2d1952a7320859cfd962b4p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_626a90ad5c2d1952a7320859cfd962b4p1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_626a90ad5c2d1952a7320859cfd962b4p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_626a90ad5c2d1952a7320859cfd962b4p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_626a90ad5c2d1952a7320859cfd962b4p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_626a90ad5c2d1952a7320859cfd962b4p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_626a90ad5c2d1952a7320859cfd962b4p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_626a90ad5c2d1952a7320859cfd962b4p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_626a90ad5c2d1952a7320859cfd962b4p1@Mir184
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_626a90ad5c2d1952a7320859cfd962b4p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_626a90ad5c2d1952a7320859cfd962b4p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_626a90ad5c2d1952a7320859cfd962b4p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_626a90ad5c2d1952a7320859cfd962b4-, p@chr16:21743134..21743139
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_626a90ad5c2d1952a7320859cfd962b4p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_626a90ad5c2d1952a7320859cfd962b4p5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_626a90ad5c2d1952a7320859cfd962b4p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_626a90ad5c2d1952a7320859cfd962b4p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_626a90ad5c2d1952a7320859cfd962b4p@chr3:129525389..129525400, -
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_3415ab3584829ab0db6dca4ced299645p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_3415ab3584829ab0db6dca4ced299645p@chr7:64675015..64675028, +
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_3415ab3584829ab0db6dca4ced299645p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_3415ab3584829ab0db6dca4ced299645p@chr7:64675015..64675028, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_60ca0a6a119ac7220af09706e0abacccp6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_60ca0a6a119ac7220af09706e0abacccp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_60ca0a6a119ac7220af09706e0abacccp6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_60ca0a6a119ac7220af09706e0abacccp@chr6:97891135..97891147, +
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_75d1a099f83f5854bc5de7b03ca8849ep1@4933429O19Rik
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_75d1a099f83f5854bc5de7b03ca8849ep1@4933429O19Rik
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_46b679f70813f237f6c8f4c5c2c14211p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_46b679f70813f237f6c8f4c5c2c14211p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_46b679f70813f237f6c8f4c5c2c14211p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_46b679f70813f237f6c8f4c5c2c14211p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_46b679f70813f237f6c8f4c5c2c14211p3@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_46b679f70813f237f6c8f4c5c2c14211p1@Pdc
4.97e-77FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_46b679f70813f237f6c8f4c5c2c14211p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_46b679f70813f237f6c8f4c5c2c14211p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_46b679f70813f237f6c8f4c5c2c14211p1@Pdc
4.97e-77FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_46b679f70813f237f6c8f4c5c2c14211p6@Fbxo27
4.97e-77FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_46b679f70813f237f6c8f4c5c2c14211p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_46b679f70813f237f6c8f4c5c2c14211p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_46b679f70813f237f6c8f4c5c2c14211p3@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_46b679f70813f237f6c8f4c5c2c14211p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_46b679f70813f237f6c8f4c5c2c14211p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_46b679f70813f237f6c8f4c5c2c14211p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_46b679f70813f237f6c8f4c5c2c14211p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_46b679f70813f237f6c8f4c5c2c14211p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_46b679f70813f237f6c8f4c5c2c14211p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_46b679f70813f237f6c8f4c5c2c14211p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_46b679f70813f237f6c8f4c5c2c14211p3@Gngt2
4.97e-77FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_46b679f70813f237f6c8f4c5c2c14211p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_46b679f70813f237f6c8f4c5c2c14211p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_46b679f70813f237f6c8f4c5c2c14211p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_46b679f70813f237f6c8f4c5c2c14211p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_46b679f70813f237f6c8f4c5c2c14211p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_46b679f70813f237f6c8f4c5c2c14211p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_46b679f70813f237f6c8f4c5c2c14211p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_46b679f70813f237f6c8f4c5c2c14211p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_46b679f70813f237f6c8f4c5c2c14211p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_46b679f70813f237f6c8f4c5c2c14211p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_46b679f70813f237f6c8f4c5c2c14211p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_46b679f70813f237f6c8f4c5c2c14211p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_46b679f70813f237f6c8f4c5c2c14211p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_46b679f70813f237f6c8f4c5c2c14211p6@Fbxo27
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_46b679f70813f237f6c8f4c5c2c14211p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_46b679f70813f237f6c8f4c5c2c14211p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_46b679f70813f237f6c8f4c5c2c14211p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_46b679f70813f237f6c8f4c5c2c14211p5@LOC100504989, p5@Timeless










Property "Property value" (as page type) with input value "UBPROP:0000001 "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.