UBERON:0000062
From FANTOM5_SSTAR
Name: | organ | ||
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Namespace: | FANTOM | ||
Definition: | "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] | ||
Xrefs: |
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Comments: | note that CARO does not include a generic 'organ' class, only simple and compound organ |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0010000(multicellular anatomical structure) |
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part_of: | UBERON:0000467(anatomical system) |
Children
is a: | UBERON:0000020 (sense organ),UBERON:0000057 (urethra),UBERON:0000094 (membrane organ),UBERON:0000171 (respiration organ),UBERON:0000955 (brain),UBERON:0000997 (mammalian vulva),UBERON:0001630 (muscle organ),UBERON:0001849 (membranous labyrinth),UBERON:0001987 (placenta),UBERON:0002097 (skin of body),UBERON:0002530 (gland),UBERON:0003103 (compound organ),UBERON:0003133 (reproductive organ),UBERON:0004177 (hemopoietic organ),UBERON:0004765 (skeletal element),UBERON:0005057 (immune organ),UBERON:0005174 (dorsal region element),UBERON:0005177 (trunk region element),UBERON:0005906 (serous sac),UBERON:0007196 (tracheobronchial tree),UBERON:0013765 (digestive system element) |
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part of: | UBERON:0000064 (organ part),UBERON:0006876 (vasculature of organ) |
Ontology Tree: Loaded from BioPortal
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000062 (organ), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
No analysis results