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{{UBERON
 
{{UBERON
|id=UBERON:0000073
+
|alt_id=
|name=regional part of nervous system
 
|namespace=
 
|def="An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
 
|xref=ncithesaurus:Nervous_System_Part;;NIF_GrossAnatomy:birnlex_1157;;SCTID:25087005
 
|is_a=UBERON:0000481;;UBERON:0004121
 
|synonym="part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
 
 
|comment=grouping class
 
|comment=grouping class
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=Melissa Haendel
 
|created_by=Melissa Haendel
|obo_creation_date=2009-06-18T09:00:04Z
+
|def="An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0000073
 +
|is_a=UBERON:0000481
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=regional part of nervous system
 +
|namespace=
 +
|obo_creation_date=2009-06-18T09:00:04Z
 
|part_of=UBERON:0001016
 
|part_of=UBERON:0001016
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
 +
|union_of=
 +
|xref=ncithesaurus:Nervous_System_Part;;NIF_GrossAnatomy:birnlex_1157;;SCTID:25087005
 
}}
 
}}

Revision as of 01:50, 12 September 2014

Name:regional part of nervous system
Definition:"An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
Xrefs:
links:

ncithesaurus:Nervous_System_Part
NIF_GrossAnatomy:birnlex_1157

SCTID:25087005
Synonyms: "part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
Comments:grouping class
Created by:Melissa Haendel
Creation date:2009-06-18T09:00:04Z

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000481(multi-tissue structure)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0001948 (regional part of spinal cord),UBERON:0002616 (regional part of brain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000073 (regional part of nervous system), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.03e-139FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_da4432861d8611996c67012769efe99ep5@ST8SIA3
1.03e-139FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_da4432861d8611996c67012769efe99ep5@ST8SIA3
1.4e-135FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_12744785d3f2c3d802a5947ba9a38790p3@CTNND2
1.4e-135FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_12744785d3f2c3d802a5947ba9a38790p3@CTNND2
1.47e-135FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_8d0f92af35f7d21b484b92d329e845adp2@RFX4
1.47e-135FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_8d0f92af35f7d21b484b92d329e845adp2@RFX4
1.29e-133FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_ee15c6c6fdebde52ec6ff4ce716f2fd2p1@ENST00000412957
1.29e-133FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_ee15c6c6fdebde52ec6ff4ce716f2fd2p1@ENST00000412957
1.78e-132FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_0ab1b76b12f1e0db7d9b0992b30d17b2p2@GABRG1
1.78e-132FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_0ab1b76b12f1e0db7d9b0992b30d17b2p2@GABRG1
1.89e-132FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_380dfc71f43866418b44d111bd58b961p3@NRXN1
1.89e-132FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_380dfc71f43866418b44d111bd58b961p3@NRXN1
4.31e-132FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_7df86ef191b58995dce21e3e0e3ef39fp@chr5:87439352..87439386, -
4.31e-132FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_7df86ef191b58995dce21e3e0e3ef39fp@chr5:87439352..87439386, -
5.61e-132FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_0fe31d3b1bc6fe2e4a81c58fbdf3267ep17@PRKACB
5.61e-132FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_0fe31d3b1bc6fe2e4a81c58fbdf3267ep17@PRKACB
1.28e-130FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_0b50d3a6a5522f12ae0b8651991deda2p4@APC
1.28e-130FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_0b50d3a6a5522f12ae0b8651991deda2p4@APC
2.58e-130FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_f23624ceb975e8ee183fa5b038491b72p8@CTNND2
2.58e-130FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_f23624ceb975e8ee183fa5b038491b72p8@CTNND2
3.44e-130FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_a9d1f7f2b2bbcb84affab5f932ebea84p1@RFX4
3.44e-130FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_a9d1f7f2b2bbcb84affab5f932ebea84p1@RFX4
6.81e-130FFCP PHASE1:Hg19::chr6:136847393..136847403,-#_05de64c35991fd5c5eee96839b8a7a72p15@MAP7
6.81e-130FFCP PHASE2:Hg19::chr6:136847393..136847403,-#_05de64c35991fd5c5eee96839b8a7a72p15@MAP7
1.57e-129FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_0cc3a589643390d8056a6f328826f390p@chr5:146314142..146314146, -
1.57e-129FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_0cc3a589643390d8056a6f328826f390-, p@chr5:146314142..146314146
3.15e-129FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_0c4a46267db1fe8af08e410db6022e47p7@DTNA
3.15e-129FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_0c4a46267db1fe8af08e410db6022e47p7@DTNA
5.62e-129FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_166d617cf8137fa60386762fa567ef33p2@KCNJ16
5.62e-129FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_166d617cf8137fa60386762fa567ef33p2@KCNJ16
6.58e-129FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_b75709eede26e2bc1805bf3a507915c1p9@PRKACB
6.58e-129FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_b75709eede26e2bc1805bf3a507915c1p9@PRKACB
9.65e-129FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_6172e2b6779a97a1a0ab98ae5ba78318p4@ARHGEF26-AS1
9.65e-129FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_6172e2b6779a97a1a0ab98ae5ba78318p4@ARHGEF26-AS1
6.04e-128FFCP PHASE1:Hg19::chr15:79576178..79576222,-#_b96a434f8a9e948d70c6ce6e6e17906bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.04e-128FFCP PHASE2:Hg19::chr15:79576178..79576222,-#_b96a434f8a9e948d70c6ce6e6e17906bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.67e-128FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_059606fec18d91c863398f77a8ac62d8p4@RFX4
6.67e-128FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_059606fec18d91c863398f77a8ac62d8p4@RFX4
7.68e-128FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_c42b52beddce76cbf7b63c30c90dbbefp1@LOC100289347
7.68e-128FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_c42b52beddce76cbf7b63c30c90dbbefp1@LOC100289347
1.54e-126FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_a4da7a72e42648b298a70d2b9533d24ep1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.54e-126FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_a4da7a72e42648b298a70d2b9533d24ep1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.55e-126FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_1221cca131a5bc99df8de0e028b57c2bp4@SLC1A2
1.55e-126FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_1221cca131a5bc99df8de0e028b57c2bp4@SLC1A2
1.87e-126FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_4e38553aac5e44bf19add2a467c0a2a0p2@CTNND2
1.87e-126FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_4e38553aac5e44bf19add2a467c0a2a0p2@CTNND2
2.32e-126FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_866055af00b1d00e56cec62706405a07p@chr6:80131670..80131724, +
2.32e-126FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_866055af00b1d00e56cec62706405a07+, p@chr6:80131670..80131724
2.35e-126FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_62a5307655248b87703cee41528e7c1cp17@NTRK2
2.35e-126FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_62a5307655248b87703cee41528e7c1cp17@NTRK2
2.47e-126FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_9fbc05f52781bcf17ef7ddc158360c16p9@GPM6B
2.47e-126FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_9fbc05f52781bcf17ef7ddc158360c16p9@GPM6B
6.64e-126FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_6c11ee96c921b7760707466736ce6e76p1@ANKFN1
6.64e-126FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_6c11ee96c921b7760707466736ce6e76p1@ANKFN1
8.82e-126FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_58f50bfb72174291b36614c9c7c64190p3@SFXN5
8.82e-126FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_58f50bfb72174291b36614c9c7c64190p3@SFXN5
1.13e-125FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_236f7f4f7d17fadfba59b4a5bed21a90p@chr15:46702499..46702523, +
1.13e-125FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_236f7f4f7d17fadfba59b4a5bed21a90p@chr15:46702499..46702523, +
1.15e-125FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_6c69f61d58662dc36011c9a293c7e9bbp8@DST
1.15e-125FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_6c69f61d58662dc36011c9a293c7e9bbp8@DST
1.37e-125FFCP PHASE1:Hg19::chr3:167452969..167453019,+#_89a838049e58346d3c9274722549f357p2@SERPINI1
1.37e-125FFCP PHASE2:Hg19::chr3:167452969..167453019,+#_89a838049e58346d3c9274722549f357p2@SERPINI1
1.38e-125FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_db40d2260c7883e4cc045e38f2152668p1@ATP10B
1.38e-125FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_db40d2260c7883e4cc045e38f2152668p1@ATP10B
1.45e-125FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_68f4143f77528f7c5c078cfa88b2dc34p1@GABRG1
1.45e-125FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_68f4143f77528f7c5c078cfa88b2dc34p1@GABRG1
2.45e-125FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_691e0367fd0a88671329dfbdee01b0fep8@PRKCZ
2.45e-125FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_691e0367fd0a88671329dfbdee01b0fep8@PRKCZ
2.7e-125FFCP PHASE1:Hg19::chrX:139794589..139794595,+#_4589fb288c4bdc707f8d5633044c0639p@chrX:139794589..139794595, +
2.7e-125FFCP PHASE2:Hg19::chrX:139794589..139794595,+#_4589fb288c4bdc707f8d5633044c0639p@chrX:139794589..139794595, +
2.73e-125FFCP PHASE1:Hg19::chr14:24047772..24047790,-#_55a0739376228594856debc8edc22467p6@JPH4
2.73e-125FFCP PHASE2:Hg19::chr14:24047772..24047790,-#_55a0739376228594856debc8edc22467p6@JPH4
4.98e-125FFCP PHASE1:Hg19::chr5:161275118..161275138,+#_70e5aefdb73b9f0aef1ffeaeae1436bap3@GABRA1
4.98e-125FFCP PHASE2:Hg19::chr5:161275118..161275138,+#_70e5aefdb73b9f0aef1ffeaeae1436bap3@GABRA1
1.02e-124FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_de6efae33d7175e97429fbb347a4d5c6-, p@chr7:47420733..47420758
1.02e-124FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_de6efae33d7175e97429fbb347a4d5c6-, p@chr7:47420733..47420758
1.87e-124FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_04f73ccdf2256b6c06946aad032bf846p@chr17:7558857..7558903, +
1.87e-124FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_04f73ccdf2256b6c06946aad032bf846p@chr17:7558857..7558903, +
2.2e-124FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_fd61f0bf77ed8879826d9c651b11896ap1@GPR61
2.2e-124FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_fd61f0bf77ed8879826d9c651b11896ap1@GPR61
2.34e-124FFCP PHASE2:Hg19::chr6:29595998..29596020,-#_ddcbe9242233b8a468b1513a4716995fp5@GABBR1
2.34e-124FFCP PHASE1:Hg19::chr6:29595998..29596020,-#_ddcbe9242233b8a468b1513a4716995fp5@GABBR1
4.18e-124FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_c6284fb829aed6308046bddbcbb4c428p2@uc002fch.1
4.18e-124FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_c6284fb829aed6308046bddbcbb4c428p2@uc002fch.1
4.41e-124FFCP PHASE2:Hg19::chr5:11904100..11904112,-#_38c4a6e25efd093cffee79533fc0084bp19@CTNND2
4.41e-124FFCP PHASE1:Hg19::chr5:11904100..11904112,-#_38c4a6e25efd093cffee79533fc0084bp19@CTNND2
5.54e-124FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_a294118a5fab2cf242f43ee2e827e030p3@GABRG1
5.54e-124FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_a294118a5fab2cf242f43ee2e827e030p3@GABRG1
1.31e-123FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_2887d0a05aa1c32da35b99a41d497864p5@AQP4
1.31e-123FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_2887d0a05aa1c32da35b99a41d497864p5@AQP4
1.63e-123FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_5e68234f076a55c9bce70822e934e4fdp2@SRCIN1
1.63e-123FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_5e68234f076a55c9bce70822e934e4fdp2@SRCIN1
1.85e-123FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_9de801b2ec85c0332bf1c6aaa16a3b16p9@MAP2
1.85e-123FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_9de801b2ec85c0332bf1c6aaa16a3b16p9@MAP2
2.38e-123FFCP PHASE1:Hg19::chr5:161494521..161494557,+#_f0cc3a7f937c7a243372be20b891a210p7@GABRG2
2.38e-123FFCP PHASE2:Hg19::chr5:161494521..161494557,+#_f0cc3a7f937c7a243372be20b891a210p7@GABRG2
3.91e-123FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_e084a53080c62f7f9a3a125e80938bdcp2@PAQR6
3.91e-123FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_e084a53080c62f7f9a3a125e80938bdcp2@PAQR6
6.32e-123FFCP PHASE1:Hg19::chr2:73286294..73286310,-#_37153257531c54dc216abdf7a8072051p4@SFXN5
6.32e-123FFCP PHASE2:Hg19::chr2:73286294..73286310,-#_37153257531c54dc216abdf7a8072051p4@SFXN5