Personal tools

UBERON:0000077

From FANTOM5_SSTAR

Revision as of 08:05, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:mixed endoderm/mesoderm-derived structure
Namespace:FANTOM
Definition:"An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm]
Comments:Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
Subset: grouping_class

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0000925(endoderm),UBERON:0000926(mesoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm)



Children

is a:UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001040 (yolk sac),UBERON:0001987 (placenta),UBERON:0002012 (pulmonary artery),UBERON:0002061 (truncus arteriosus),UBERON:0002370 (thymus),UBERON:0004340 (allantois),UBERON:0004363 (pharyngeal arch artery),UBERON:0004645 (urinary bladder urothelium),UBERON:0005432 (aortic sac),UBERON:0015796 (liver blood vessel)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000077 (mixed endoderm/mesoderm-derived structure), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.33e-44FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_28422ec49ca5d60fcc8c4373a875d97fp4@uc009bpa.1
5.33e-44FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_28422ec49ca5d60fcc8c4373a875d97fp4@uc009bpa.1
1.44e-43FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_06d7e97d8ffc5823b291c8e541e79a6bp8@uc009bpa.1
1.44e-43FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_06d7e97d8ffc5823b291c8e541e79a6bp@chr9:44807434..44807445, -
1.44e-43FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_06d7e97d8ffc5823b291c8e541e79a6bp8@uc009bpa.1
1.44e-43FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_06d7e97d8ffc5823b291c8e541e79a6bp@chr9:44807434..44807445, -
4.36e-42FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_169a47f81301cc601bfe3be3aec04cc8p1@ENSMUST00000103288, p1@uc009bpl.1
4.36e-42FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_169a47f81301cc601bfe3be3aec04cc8p1@ENSMUST00000103288, p1@uc009bpl.1
2.13e-41FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_7ecabb3fc58e239f6d97067c62778595p@chr6:41491752..41491776, -
2.13e-41FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_7ecabb3fc58e239f6d97067c62778595p@chr12:108361918..108361930, -
2.13e-41FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_7ecabb3fc58e239f6d97067c62778595p@chr6:41491752..41491776, -
2.13e-41FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_7ecabb3fc58e239f6d97067c62778595p@chr12:108361918..108361930, -
2.35e-40FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_c78bd5f3f36c50cb4d42527bafd5cf96p2@ENSMUST00000103283
2.35e-40FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_c78bd5f3f36c50cb4d42527bafd5cf96p2@ENSMUST00000103283
2.69e-40FFCP PHASE2:Mm9::chr9:14708196..14708216,-#_6f00ad1daea7df9bbecc46fd93147dbep2@Folr4
2.69e-40FFCP PHASE1:Mm9::chr9:14708196..14708216,-#_6f00ad1daea7df9bbecc46fd93147dbep2@Folr4
2.73e-40FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_f252f800a730b35a3dd00bd69a799436p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.73e-40FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_f252f800a730b35a3dd00bd69a799436p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
1.43e-39FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_e23b193deadde49f0deb4f78d5f7e8aap@chr6:41494001..41494028, +
1.43e-39FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_e23b193deadde49f0deb4f78d5f7e8aap@chr6:41494001..41494028, +
2.66e-39FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_1c06ed13b832b4470181f2fe07c57405p11@Prkcq
2.66e-39FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_1c06ed13b832b4470181f2fe07c57405p11@Prkcq
3.03e-39FFCP PHASE2:Mm9::chr9:44807068..44807099,-#_8115f44ac16194142c1c12519f95e838p@chr9:44807068..44807099, -
3.03e-39FFCP PHASE1:Mm9::chr9:44807068..44807099,-#_8115f44ac16194142c1c12519f95e838p@chr9:44807068..44807099, -
3.37e-39FFCP PHASE1:Mm9::chr6:41128379..41128400,+#_a119b0d03dc169781dbe5724f276424ap2@uc009boj.1
3.37e-39FFCP PHASE2:Mm9::chr6:41128379..41128400,+#_a119b0d03dc169781dbe5724f276424ap2@uc009boj.1
3.49e-39FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_c2816eca89619d2e259786e65e02150bp@chr9:44809185..44809215, -
3.49e-39FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_c2816eca89619d2e259786e65e02150bp@chr9:44809185..44809215, -
4.06e-39FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_f8536971c967d2f8df76647ea26d2d27p@chr14:54791784..54791787, +
4.06e-39FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_f8536971c967d2f8df76647ea26d2d27p@chr14:54791784..54791787, +
5.93e-39FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_9c6a0fcf5b42c4caa0eb3833c9fab21ap1@ENSMUST00000103263
5.93e-39FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_9c6a0fcf5b42c4caa0eb3833c9fab21ap1@ENSMUST00000103263
7.78e-39FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_e8f2764ed9ef855efa094a29279c477cp@chr9:44793518..44793537, +
7.78e-39FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_e8f2764ed9ef855efa094a29279c477cp@chr9:44793518..44793537, +
9.21e-39FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_7cfccfc1201fa7e9ff6d9ebf697153a1p@chr6:41071548..41071565, +
9.21e-39FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_7cfccfc1201fa7e9ff6d9ebf697153a1+, p@chr6:41071548..41071565
1.25e-38FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_c9d7ceeb4123d94b959ac9eabf10b985p5@Themis
1.25e-38FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_c9d7ceeb4123d94b959ac9eabf10b985p5@Themis
1.38e-38FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d57558222321d93cc9def16324ad66f3p5@uc009bpa.1
1.38e-38FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d57558222321d93cc9def16324ad66f3p5@uc009bpa.1
2.04e-38FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_e98fd1138d42aeb726dbffc63d11adc5p2@uc009bnp.1, p2@uc012eki.1
2.04e-38FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_e98fd1138d42aeb726dbffc63d11adc5p2@uc009bnp.1, p2@uc012eki.1
3.45e-38FFCP PHASE2:Mm9::chr6:41493353..41493378,+#_7da7542c1b43bcf5c9cd752f22202a75p1@ENSMUST00000103296, p1@uc009bpv.1
3.45e-38FFCP PHASE1:Mm9::chr6:41493353..41493378,+#_7da7542c1b43bcf5c9cd752f22202a75p1@ENSMUST00000103296, p1@uc009bpv.1
8.18e-38FFCP PHASE1:Mm9::chr15:66633167..66633182,-#_90f8c26942144f2f461051e6d4c75724p6@Sla
8.18e-38FFCP PHASE2:Mm9::chr15:66633167..66633182,-#_90f8c26942144f2f461051e6d4c75724p6@Sla
1.04e-37FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_f29036d9d958a66f4f4d03ae941a24fdp5@Tcf7
1.04e-37FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_f29036d9d958a66f4f4d03ae941a24fdp5@Tcf7
1.18e-37FFCP PHASE1:Mm9::chr6:41493580..41493619,+#_4fff000cebd91204839ba1b99ed692e8p1@ENSMUST00000169595
1.18e-37FFCP PHASE2:Mm9::chr6:41493580..41493619,+#_4fff000cebd91204839ba1b99ed692e8p1@ENSMUST00000169595
1.55e-37FFCP PHASE1:Mm9::chr6:41491889..41491902,+#_4aa54d5e9856d9a07a6527cf791d77b7p2@uc009bpo.1, p2@uc009bpp.1
1.55e-37FFCP PHASE2:Mm9::chr6:41491889..41491902,+#_4aa54d5e9856d9a07a6527cf791d77b7p2@uc009bpo.1, p2@uc009bpp.1
1.61e-37FFCP PHASE1:Mm9::chr6:41493624..41493641,+#_5528d714977518a868bff80f9aaf4cd9p2@ENSMUST00000169595
1.61e-37FFCP PHASE2:Mm9::chr6:41493624..41493641,+#_5528d714977518a868bff80f9aaf4cd9p2@ENSMUST00000169595
2.32e-37FFCP PHASE2:Mm9::chr7:25692325..25692345,+#_8c726917402d3d52cfe76a7530568b66p6@Arhgef1
2.32e-37FFCP PHASE1:Mm9::chr7:25692325..25692345,+#_8c726917402d3d52cfe76a7530568b66p6@Arhgef1
2.53e-37FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_d8b6c99d8f1806d30af4babb215bce37p@chr14:61328148..61328173, +
2.53e-37FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_d8b6c99d8f1806d30af4babb215bce37p@chr14:61328148..61328173, +
4.04e-37FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_43ec01e8df16fb7deea699276d186efbp1@uc012ekr.1
4.04e-37FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_43ec01e8df16fb7deea699276d186efbp1@uc012ekr.1
4.71e-37FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_71c4377ca76ba0102fa72ea30786f4c5p2@1810009J06Rik
4.71e-37FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_71c4377ca76ba0102fa72ea30786f4c5p2@1810009J06Rik
5.24e-37FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_7d32931e24460560543663ecf595b9fcp2@uc009bpa.1
5.24e-37FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_7d32931e24460560543663ecf595b9fcp2@uc009bpa.1
5.75e-37FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_2f3c27c5e6953eda0a8f329dde03d2a9p2@Sh2d1a
5.75e-37FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_2f3c27c5e6953eda0a8f329dde03d2a9p2@Sh2d1a
6.09e-37FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_f35499633b722a2be75ffadf208cbb94p1@uc012ekk.1
6.09e-37FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_f35499633b722a2be75ffadf208cbb94p1@uc012ekk.1
6.75e-37FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_6c7ee21e7c4dbe830a93d8108fb56e87p3@uc009bpo.1, p3@uc009bpp.1
6.75e-37FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_6c7ee21e7c4dbe830a93d8108fb56e87p3@uc009bpo.1, p3@uc009bpp.1
6.75e-37FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_6c7ee21e7c4dbe830a93d8108fb56e87p1@ENSMUST00000103265
6.75e-37FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_6c7ee21e7c4dbe830a93d8108fb56e87p1@ENSMUST00000103265
8.39e-37FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_b0ac31ff953ecbcf6d878571abad8206p@chr7:133512043..133512060, -
8.39e-37FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_b0ac31ff953ecbcf6d878571abad8206p@chr7:133512043..133512060, -
1.29e-36FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_5af9edfdf8160133a82340eda06dbd64p5@Trat1
1.29e-36FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_5af9edfdf8160133a82340eda06dbd64p5@Trat1
1.31e-36FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_ffd907ba3e30e030bd8072693d76fe2cp2@Gm5409
1.31e-36FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_ffd907ba3e30e030bd8072693d76fe2cp2@Gm5409
1.86e-36FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_172416a1badf68afd62b5049e7036543p@chr14:54794540..54794554, +
1.86e-36FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_172416a1badf68afd62b5049e7036543p@chr14:54794540..54794554, +
1.87e-36FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_cbd79083f826868c6560f619ed656221p@chr6:41489240..41489252, +
1.87e-36FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_cbd79083f826868c6560f619ed656221p@chr6:41489240..41489252, +
1.97e-36FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_0f36e2a473121063868f598ed7636b96p@chr6:41491801..41491815, -
1.97e-36FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_0f36e2a473121063868f598ed7636b96p@chr6:41491801..41491815, -
1.97e-36FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_0f36e2a473121063868f598ed7636b96p@chr14:54496363..54496388, +
1.97e-36FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_0f36e2a473121063868f598ed7636b96p@chr14:54496363..54496388, +
2.19e-36FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_41d086e622f1dd9af49273104cbe6b54p1@ENSMUST00000103282
2.19e-36FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_41d086e622f1dd9af49273104cbe6b54p@chr6:41494376..41494389, -
2.19e-36FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_41d086e622f1dd9af49273104cbe6b54p@chr6:41494376..41494389, -
2.19e-36FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_41d086e622f1dd9af49273104cbe6b54p1@ENSMUST00000103282
2.25e-36FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_84d1b7ce971b6b5cefe42d54b3e84e15p@chr4:125978325..125978339, -
2.25e-36FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_84d1b7ce971b6b5cefe42d54b3e84e15p8@Lat
2.25e-36FFCP PHASE1:Mm9::chr16:10690320..10690361,+#_84d1b7ce971b6b5cefe42d54b3e84e15p@chr16:10690320..10690361, +
2.25e-36FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_84d1b7ce971b6b5cefe42d54b3e84e15p6@uc009bpa.1
2.25e-36FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_84d1b7ce971b6b5cefe42d54b3e84e15p@chr4:125978325..125978339, -
2.25e-36FFCP PHASE2:Mm9::chr16:10690320..10690361,+#_84d1b7ce971b6b5cefe42d54b3e84e15p@chr16:10690320..10690361, +
2.25e-36FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_84d1b7ce971b6b5cefe42d54b3e84e15p6@uc009bpa.1
2.25e-36FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_84d1b7ce971b6b5cefe42d54b3e84e15p8@Lat
2.33e-36FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_c315a20539f13a4e5143640a3b09e5afp7@Lat
2.33e-36FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_c315a20539f13a4e5143640a3b09e5afp7@Lat