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|namespace=
 
|namespace=
 
|def="First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
 
|def="First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
|xref=AAO:0010355;;BTO:0001090;;EFO:0000825;;FBbt:00003126;;FMA:49184;;GAID:75;;galen:Mouth;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg;;MA:0002474;;MAT:0000038;;MESH:A.01.456.505.631;;MIAA:0000038;;OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA;;TADS:0000040;;TAO:0000547;;TGMA:0000131;;VHOG:0000812;;XAO:0003029;;ZFA:0000547
+
|xref=AAO:0010355;;BTO:0001090;;EFO:0000825;;FBbt:00003126;;FMA:49184;;GAID:75;;galen:Mouth;;http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg;;MA:0002474;;MAT:0000038;;MESH:A.01.456.505.631;;MIAA:0000038;;OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA;;TADS:0000040;;TAO:0000547;;TGMA:0000131;;VHOG:0000812;;XAO:0003029;;ZFA:0000547
 
|is_a=UBERON:0001444;;UBERON:0004119;;UBERON:0004121
 
|is_a=UBERON:0001444;;UBERON:0004119;;UBERON:0004121
|synonym="adult mouth" EXACT [];;"cavitas oris" RELATED [BTO:0001090];;"cavum oris" RELATED [BTO:0001090];;"mouth cavity" RELATED [BTO:0001090];;"oral vestibule" RELATED [BTO:0001090];;"regio oralis" EXACT [FMA:49184, FMA:TA];;"rima oris" RELATED [BTO:0001090];;"stoma" RELATED [];;"vestibule of mouth" RELATED [BTO:0001090];;"vestibulum oris" RELATED [BTO:0001090]
+
|synonym="adult mouth" EXACT [];;"cavitas oris" RELATED [BTO:0001090];;"cavum oris" RELATED [BTO:0001090];;"mouth cavity" RELATED [BTO:0001090];;"oral vestibule" RELATED [BTO:0001090];;"os, cavital oralis" RELATED LATIN [Wikipedia:Mouth];;"regio oralis" EXACT [FMA:49184, FMA:TA];;"rima oris" RELATED [BTO:0001090];;"stoma" RELATED [];;"vestibule of mouth" RELATED [BTO:0001090];;"vestibulum oris" RELATED [BTO:0001090]
 
|comment=TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
 
|comment=TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
 
|alt_id=
 
|alt_id=
Line 14: Line 14:
 
|obo_creation_date=
 
|obo_creation_date=
 
|subset=major_organ;;uberon_slim;;vertebrate_core
 
|subset=major_organ;;uberon_slim;;vertebrate_core
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
|develops_from=UBERON:0000930
+
|develops_from=
 
|has_quality=
 
|has_quality=
 
|located_in=
 
|located_in=
|part_of=UBERON:0001555
+
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
+
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string
 
|is_obsolete=
 
|is_obsolete=
 
|preceded_by=
 
|preceded_by=
 
}}
 
}}

Revision as of 07:56, 26 June 2012

Name:mouth
Definition:"First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
Xrefs:
links:

AAO:0010355
BTO:0001090
EFO:0000825
FBbt:00003126
FMA:49184
GAID:75
galen:Mouth
[1]
[2]
MA:0002474
MAT:0000038
MESH:A.01.456.505.631
MIAA:0000038
OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
TADS:0000040
TAO:0000547
TGMA:0000131
VHOG:0000812
XAO:0003029

ZFA:0000547
Synonyms: "adult mouth" EXACT []
"cavitas oris" RELATED [BTO:0001090]
"cavum oris" RELATED [BTO:0001090]
"mouth cavity" RELATED [BTO:0001090]
"oral vestibule" RELATED [BTO:0001090]
"os, cavital oralis" RELATED LATIN [Wikipedia:Mouth]
"regio oralis" EXACT [FMA:49184, FMA:TA]
"rima oris" RELATED [BTO:0001090]
"stoma" RELATED []
"vestibule of mouth" RELATED [BTO:0001090]
"vestibulum oris" RELATED [BTO:0001090]
Comments:TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
Subset: major_organ
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001444(subdivision of head),UBERON:0004119(endoderm-derived structure),UBERON:0004121(ectoderm-derived structure)



Children

part of:UBERON:0000166 (oral opening),UBERON:0000167 (oral cavity),UBERON:0001723 (tongue),UBERON:0003729 (mouth mucosa),UBERON:0010047 (oral gland),UBERON:0010056 (future tongue),UBERON:0011595 (jaw region)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000165 (mouth), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr15:91729805..91729815,+#_0dd8fdab0a69022d45c6f6588bc56faap@chr15:91729805..91729815, +
1.87e-86FFCP PHASE1:Mm9::chr12:57793900..57793908,-#_0dd8fdab0a69022d45c6f6588bc56faap@chr12:57793900..57793908, -
1.87e-86FFCP PHASE2:Mm9::chr15:91729805..91729815,+#_0dd8fdab0a69022d45c6f6588bc56faap@chr15:91729805..91729815, +
1.87e-86FFCP PHASE2:Mm9::chr15:91668686..91668696,+#_0dd8fdab0a69022d45c6f6588bc56faap2@Smgc
1.87e-86FFCP PHASE1:Mm9::chr15:91668686..91668696,+#_0dd8fdab0a69022d45c6f6588bc56faap2@Smgc
1.87e-86FFCP PHASE2:Mm9::chr12:57793900..57793908,-#_0dd8fdab0a69022d45c6f6588bc56faap@chr12:57793900..57793908, -
2.11e-67FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_80b66d9b90a70e2587ed48842c1fc718p@chr1:75599672..75599682, -
2.11e-67FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_80b66d9b90a70e2587ed48842c1fc718p@chr1:75599672..75599682, -
2.86e-62FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_4c1a9c3b1afb92a307db23216c23894ep1@ENST00000427892, p1@uc001dgp.1
2.86e-62FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_4c1a9c3b1afb92a307db23216c23894ep1@ENST00000427892, p1@uc001dgp.1
7.26e-62FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_b922ef059448ef381eea81dd250ab289p2@PAX9
7.26e-62FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_b922ef059448ef381eea81dd250ab289p2@PAX9
1.17e-59FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_ca56e14ab8a31406db12314adbf85377p@chr1:75599683..75599699, -
1.17e-59FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_ca56e14ab8a31406db12314adbf85377-, p@chr1:75599683..75599699
1.68e-58FFCP PHASE2:Mm9::chr6:60435965..60435986,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr6:60435965..60435986, +
1.68e-58FFCP PHASE2:Mm9::chr7:51271323..51271366,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr7:51271323..51271366, +
1.68e-58FFCP PHASE2:Mm9::chr1:52741574..52741579,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr1:52741574..52741579, +
1.68e-58FFCP PHASE1:Mm9::chr1:52741574..52741579,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr1:52741574..52741579, +
1.68e-58FFCP PHASE1:Mm9::chr6:60435965..60435986,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr6:60435965..60435986, +
1.68e-58FFCP PHASE2:Mm9::chr10:28755265..28755269,-#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr10:28755265..28755269, -
1.68e-58FFCP PHASE1:Mm9::chr10:28755265..28755269,-#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr10:28755265..28755269, -
1.68e-58FFCP PHASE1:Mm9::chr7:51271323..51271366,+#_b2e5d771e0b6e0a98c0e8ecc050ff0bcp@chr7:51271323..51271366, +
3.28e-58FFCP PHASE2:Mm9::chr2:153839410..153839423,+#_8bee0c0d830542a1f85aa9f12d25b99dp6@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr10:28693770..28693774,-#_8bee0c0d830542a1f85aa9f12d25b99dp5@2310057J18Rik
3.28e-58FFCP PHASE2:Mm9::chr10:28693770..28693774,-#_8bee0c0d830542a1f85aa9f12d25b99dp5@2310057J18Rik
3.28e-58FFCP PHASE1:Mm9::chr2:153839410..153839423,+#_8bee0c0d830542a1f85aa9f12d25b99dp6@Bpifa2e
3.28e-58FFCP PHASE2:Mm9::chr6:132314147..132314153,-#_8bee0c0d830542a1f85aa9f12d25b99dp1@Gm4736, p1@Gm8882
3.28e-58FFCP PHASE2:Mm9::chr2:153837176..153837187,+#_8bee0c0d830542a1f85aa9f12d25b99dp@chr2:153837176..153837187, +
3.28e-58FFCP PHASE1:Mm9::chr2:153840649..153840658,+#_8bee0c0d830542a1f85aa9f12d25b99dp8@Bpifa2e
3.28e-58FFCP PHASE2:Mm9::chr2:153840649..153840658,+#_8bee0c0d830542a1f85aa9f12d25b99dp8@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr6:132314147..132314153,-#_8bee0c0d830542a1f85aa9f12d25b99dp1@Gm4736, p1@Gm8882
3.28e-58FFCP PHASE1:Mm9::chr2:153837176..153837187,+#_8bee0c0d830542a1f85aa9f12d25b99dp@chr2:153837176..153837187, +
3.3e-50FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_c2a068ebb43ab58bde77855be4cd2e55p2@LHX8
3.3e-50FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_c2a068ebb43ab58bde77855be4cd2e55p2@LHX8
1.66e-44FFCP PHASE2:Mm9::chr15:91736964..91737001,+#_41d3b82e0b80d56d888cc9450fd6bb04p@chr15:91736964..91737001, +
1.66e-44FFCP PHASE2:Mm9::chr10:28706137..28706150,-#_41d3b82e0b80d56d888cc9450fd6bb04p3@2310057J18Rik
1.66e-44FFCP PHASE1:Mm9::chr10:28706137..28706150,-#_41d3b82e0b80d56d888cc9450fd6bb04p3@2310057J18Rik
1.66e-44FFCP PHASE1:Mm9::chr15:91736964..91737001,+#_41d3b82e0b80d56d888cc9450fd6bb04p@chr15:91736964..91737001, +
2.07e-44FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_e1586ed3b90b8cf88b9280e35c0e5a12p1@ENST00000555639
2.07e-44FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_e1586ed3b90b8cf88b9280e35c0e5a12p1@ENST00000555639
2.75e-44FFCP PHASE1:Mm9::chr2:153835527..153835537,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp@chr2:153835527..153835537, +
2.75e-44FFCP PHASE2:Mm9::chr2:153835527..153835537,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp@chr2:153835527..153835537, +
2.75e-44FFCP PHASE2:Mm9::chr2:153833963..153833980,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp5@Bpifa2e
2.75e-44FFCP PHASE1:Mm9::chr2:153833963..153833980,+#_90dc0aad7fc31b2ad46c5eef14e92f2bp5@Bpifa2e
4.52e-44FFCP PHASE2:Mm9::chr3:129381353..129381363,-#_6aea705790a53b011487476086a211ff-, p@chr3:129381353..129381363
4.52e-44FFCP PHASE1:Mm9::chr15:73581208..73581213,+#_6aea705790a53b011487476086a211ff+, p@chr15:73581208..73581213
4.52e-44FFCP PHASE2:Mm9::chr17:24090258..24090267,+#_6aea705790a53b011487476086a211ffp@chr17:24090258..24090267, +
4.52e-44FFCP PHASE1:Mm9::chr7:51234496..51234499,+#_6aea705790a53b011487476086a211ffp@chr7:51234496..51234499, +
4.52e-44FFCP PHASE1:Mm9::chr16:22918005..22918008,+#_6aea705790a53b011487476086a211ffp12@Fetub
4.52e-44FFCP PHASE2:Mm9::chr17:40359284..40359293,-#_6aea705790a53b011487476086a211ffp@chr17:40359284..40359293, -
4.52e-44FFCP PHASE1:Mm9::chr3:129457867..129457873,-#_6aea705790a53b011487476086a211ffp@chr3:129457867..129457873, -
4.52e-44FFCP PHASE2:Mm9::chr7:51209296..51209342,+#_6aea705790a53b011487476086a211ffp@chr7:51209296..51209342, +
4.52e-44FFCP PHASE2:Mm9::chr7:51311117..51311154,-#_6aea705790a53b011487476086a211ffp@chr7:51311117..51311154, -
4.52e-44FFCP PHASE1:Mm9::chr7:51209296..51209342,+#_6aea705790a53b011487476086a211ffp@chr7:51209296..51209342, +
4.52e-44FFCP PHASE2:Mm9::chr15:91728524..91728531,+#_6aea705790a53b011487476086a211ffp@chr15:91728524..91728531, +
4.52e-44FFCP PHASE1:Mm9::chr14:58497252..58497259,+#_6aea705790a53b011487476086a211ffp@chr14:58497252..58497259, +
4.52e-44FFCP PHASE2:Mm9::chr19:34045308..34045320,+#_6aea705790a53b011487476086a211ffp@chr19:34045308..34045320, +
4.52e-44FFCP PHASE1:Mm9::chr7:132897242..132897252,+#_6aea705790a53b011487476086a211ffp@chr7:132897242..132897252, +
4.52e-44FFCP PHASE2:Mm9::chr5:75379604..75379605,-#_6aea705790a53b011487476086a211ffp@chr5:75379604..75379605, -
4.52e-44FFCP PHASE1:Mm9::chr19:34045308..34045320,+#_6aea705790a53b011487476086a211ffp@chr19:34045308..34045320, +
4.52e-44FFCP PHASE2:Mm9::chr11:99946757..99946762,-#_6aea705790a53b011487476086a211ffp4@Krt32
4.52e-44FFCP PHASE1:Mm9::chr15:91728524..91728531,+#_6aea705790a53b011487476086a211ffp@chr15:91728524..91728531, +
4.52e-44FFCP PHASE2:Mm9::chr5:37878237..37878242,+#_6aea705790a53b011487476086a211ffp@chr5:37878237..37878242, +
4.52e-44FFCP PHASE1:Mm9::chr17:40360870..40360872,-#_6aea705790a53b011487476086a211ff-, p@chr17:40360870..40360872
4.52e-44FFCP PHASE1:Mm9::chr12:31163928..31163937,+#_6aea705790a53b011487476086a211ffp@chr12:31163928..31163937, +
4.52e-44FFCP PHASE1:Mm9::chr2:153700714..153700723,+#_6aea705790a53b011487476086a211ffp2@Bpifb2
4.52e-44FFCP PHASE1:Mm9::chr2:19468928..19468929,-#_6aea705790a53b011487476086a211ffp@chr2:19468928..19468929, -
4.52e-44FFCP PHASE1:Mm9::chr9:61048186..61048188,+#_6aea705790a53b011487476086a211ffp@chr9:61048186..61048188, +
4.52e-44FFCP PHASE1:Mm9::chr17:59780196..59780198,-#_6aea705790a53b011487476086a211ff-, p@chr17:59780196..59780198
4.52e-44FFCP PHASE2:Mm9::chr2:164015333..164015336,+#_6aea705790a53b011487476086a211ffp@chr2:164015333..164015336, +
4.52e-44FFCP PHASE1:Mm9::chr2:164015333..164015336,+#_6aea705790a53b011487476086a211ffp@chr2:164015333..164015336, +
4.52e-44FFCP PHASE1:Mm9::chr7:51360938..51360948,+#_6aea705790a53b011487476086a211ffp@chr7:51360938..51360948, +
4.52e-44FFCP PHASE1:Mm9::chr1:16804330..16804337,+#_6aea705790a53b011487476086a211ffp@chr1:16804330..16804337, +
4.52e-44FFCP PHASE2:Mm9::chr17:40369536..40369546,-#_6aea705790a53b011487476086a211ffp@chr17:40369536..40369546, -
4.52e-44FFCP PHASE1:Mm9::chr19:34035674..34035677,+#_6aea705790a53b011487476086a211ffp3@Lipf
4.52e-44FFCP PHASE2:Mm9::chr2:43039427..43039429,+#_6aea705790a53b011487476086a211ffp@chr2:43039427..43039429, +
4.52e-44FFCP PHASE1:Mm9::chr11:99699383..99699387,-#_6aea705790a53b011487476086a211ffp1@2300003K06Rik
4.52e-44FFCP PHASE2:Mm9::chr6:131787182..131787209,+#_6aea705790a53b011487476086a211ffp@chr6:131787182..131787209, +
4.52e-44FFCP PHASE1:Mm9::chr3:129381353..129381363,-#_6aea705790a53b011487476086a211ffp@chr3:129381353..129381363, -
4.52e-44FFCP PHASE2:Mm9::chr14:58497252..58497259,+#_6aea705790a53b011487476086a211ff+, p@chr14:58497252..58497259
4.52e-44FFCP PHASE2:Mm9::chr6:93765798..93765806,-#_6aea705790a53b011487476086a211ffp@chr6:93765798..93765806, -
4.52e-44FFCP PHASE2:Mm9::chr7:51271652..51271675,+#_6aea705790a53b011487476086a211ffp@chr7:51271652..51271675, +
4.52e-44FFCP PHASE1:Mm9::chr17:40379328..40379333,-#_6aea705790a53b011487476086a211ffp2@Crisp3
4.52e-44FFCP PHASE2:Mm9::chr11:118524835..118524836,-#_6aea705790a53b011487476086a211ffp@chr11:118524835..118524836, -
4.52e-44FFCP PHASE1:Mm9::chr4:149563260..149563266,-#_6aea705790a53b011487476086a211ffp@chr4:149563260..149563266, -
4.52e-44FFCP PHASE1:Mm9::chr5:75379604..75379605,-#_6aea705790a53b011487476086a211ffp@chr5:75379604..75379605, -
4.52e-44FFCP PHASE1:Mm9::chr2:120942174..120942183,-#_6aea705790a53b011487476086a211ffp@chr2:120942174..120942183, -
4.52e-44FFCP PHASE1:Mm9::chr2:129874079..129874084,-#_6aea705790a53b011487476086a211ffp@chr2:129874079..129874084, -
4.52e-44FFCP PHASE2:Mm9::chr2:154026044..154026056,+#_6aea705790a53b011487476086a211ffp6@Bpifb1
4.52e-44FFCP PHASE2:Mm9::chr7:51234512..51234517,+#_6aea705790a53b011487476086a211ffp@chr7:51234512..51234517, +
4.52e-44FFCP PHASE2:Mm9::chr7:51254558..51254599,-#_6aea705790a53b011487476086a211ffp@chr7:51254558..51254599, -
4.52e-44FFCP PHASE1:Mm9::chr3:102324178..102324186,+#_6aea705790a53b011487476086a211ffp@chr3:102324178..102324186, +
4.52e-44FFCP PHASE1:Mm9::chr2:43039427..43039429,+#_6aea705790a53b011487476086a211ff+, p@chr2:43039427..43039429
4.52e-44FFCP PHASE2:Mm9::chr7:51464968..51464982,+#_6aea705790a53b011487476086a211ffp@chr7:51464968..51464982, +
4.52e-44FFCP PHASE1:Mm9::chr7:51268024..51268029,+#_6aea705790a53b011487476086a211ffp2@Egfbp2, p2@Klk1b26
4.52e-44FFCP PHASE2:Mm9::chr5:118350392..118350394,-#_6aea705790a53b011487476086a211ffp@chr5:118350392..118350394, -
4.52e-44FFCP PHASE2:Mm9::chr2:153834839..153834847,+#_6aea705790a53b011487476086a211ffp@chr2:153834839..153834847, +
4.52e-44FFCP PHASE2:Mm9::chr19:34035639..34035644,+#_6aea705790a53b011487476086a211ffp4@Lipf
4.52e-44FFCP PHASE1:Mm9::chr2:154026059..154026070,+#_6aea705790a53b011487476086a211ffp8@Bpifb1
4.52e-44FFCP PHASE2:Mm9::chr4:149563260..149563266,-#_6aea705790a53b011487476086a211ffp@chr4:149563260..149563266, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.