Personal tools

UBERON:0000341

From FANTOM5_SSTAR

Revision as of 08:08, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:throat
Namespace:FANTOM
Definition:"In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat]
Xrefs:
links:

BTO:0000828
FMA:228738
[ Throat_Diagram.png Throat_Diagram.png]
[ 200px-Throat_Diagram.png 200px-Throat_Diagram.png]
ncithesaurus:Throat

OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA
Synonyms: "gula" RELATED LATIN []
Comments:Taxon notes: The hyoid bone and the clavicle are the only bones located in the throat of mammals.
Alt_id: UBERON:BTO_0000828-FMA_228738

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0000974(neck)



Children

derives from:FF:0010061 (human throat - fetal sample),FF:0010209 (human throat - adult sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000341 (throat), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.75e-130FFCP PHASE2:Hg19::chr8:134014503..134014513,+#_6a4a112d45f2cd45f940ddb91ddda90dp@chr8:134014503..134014513, +
1.75e-130FFCP PHASE1:Hg19::chr8:134014503..134014513,+#_6a4a112d45f2cd45f940ddb91ddda90dp@chr8:134014503..134014513, +
1.55e-98FFCP PHASE1:Hg19::chr19:20069252..20069265,+#_ac2137c8acdb170e1a00921a9a9562e2p@chr19:20069252..20069265, +
1.55e-98FFCP PHASE2:Hg19::chr19:20069252..20069265,+#_ac2137c8acdb170e1a00921a9a9562e2p@chr19:20069252..20069265, +
2.56e-98FFCP PHASE2:Hg19::chr8:134034341..134034352,+#_cba5fd8d45d1c29395b843da81327285p@chr8:134034341..134034352, +
2.56e-98FFCP PHASE1:Hg19::chr8:133898696..133898713,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133898696..133898713, +
2.56e-98FFCP PHASE1:Hg19::chr8:134128842..134128885,+#_cba5fd8d45d1c29395b843da81327285p@chr8:134128842..134128885, +
2.56e-98FFCP PHASE1:Hg19::chr2:107982023..107982034,-#_cba5fd8d45d1c29395b843da81327285p1@ENST00000455614
2.56e-98FFCP PHASE2:Hg19::chr8:133885405..133885431,+#_cba5fd8d45d1c29395b843da81327285+, p@chr8:133885405..133885431
2.56e-98FFCP PHASE2:Hg19::chr8:133883676..133883697,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133883676..133883697, +
2.56e-98FFCP PHASE2:Hg19::chr14:81423508..81423524,+#_cba5fd8d45d1c29395b843da81327285p@chr14:81423508..81423524, +
2.56e-98FFCP PHASE2:Hg19::chr8:134003178..134003182,+#_cba5fd8d45d1c29395b843da81327285p@chr8:134003178..134003182, +
2.56e-98FFCP PHASE2:Hg19::chr2:107982023..107982034,-#_cba5fd8d45d1c29395b843da81327285p1@ENST00000455614
2.56e-98FFCP PHASE1:Hg19::chr8:134034341..134034352,+#_cba5fd8d45d1c29395b843da81327285p@chr8:134034341..134034352, +
2.56e-98FFCP PHASE2:Hg19::chr8:134128842..134128885,+#_cba5fd8d45d1c29395b843da81327285p@chr8:134128842..134128885, +
2.56e-98FFCP PHASE1:Hg19::chr8:133885405..133885431,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133885405..133885431, +
2.56e-98FFCP PHASE1:Hg19::chr8:133913683..133913714,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133913683..133913714, +
2.56e-98FFCP PHASE1:Hg19::chr8:133883676..133883697,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133883676..133883697, +
2.56e-98FFCP PHASE2:Hg19::chr8:133895067..133895092,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133895067..133895092, +
2.56e-98FFCP PHASE1:Hg19::chr8:134003178..134003182,+#_cba5fd8d45d1c29395b843da81327285p@chr8:134003178..134003182, +
2.56e-98FFCP PHASE2:Hg19::chr8:133898696..133898713,+#_cba5fd8d45d1c29395b843da81327285+, p@chr8:133898696..133898713
2.56e-98FFCP PHASE2:Hg19::chr8:133913683..133913714,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133913683..133913714, +
2.56e-98FFCP PHASE1:Hg19::chr8:133895067..133895092,+#_cba5fd8d45d1c29395b843da81327285p@chr8:133895067..133895092, +
2.56e-98FFCP PHASE1:Hg19::chr14:81423508..81423524,+#_cba5fd8d45d1c29395b843da81327285+, p@chr14:81423508..81423524
4.22e-98FFCP PHASE1:Hg19::chr8:133883748..133883766,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133883748..133883766, +
4.22e-98FFCP PHASE1:Hg19::chr8:133900622..133900639,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133900622..133900639, +
4.22e-98FFCP PHASE2:Hg19::chr8:133898827..133898844,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133898827..133898844, +
4.22e-98FFCP PHASE1:Hg19::chr8:133885382..133885403,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133885382..133885403, +
4.22e-98FFCP PHASE2:Hg19::chr16:29801543..29801555,+#_ddab48d8677bcf806847f537fc8d3491p7@KIF22
4.22e-98FFCP PHASE1:Hg19::chr6:154669280..154669293,-#_ddab48d8677bcf806847f537fc8d3491p@chr6:154669280..154669293, -
4.22e-98FFCP PHASE2:Hg19::chr8:133898951..133898986,+#_ddab48d8677bcf806847f537fc8d3491+, p@chr8:133898951..133898986
4.22e-98FFCP PHASE2:Hg19::chr6:150691647..150691660,+#_ddab48d8677bcf806847f537fc8d3491p@chr6:150691647..150691660, +
4.22e-98FFCP PHASE2:Hg19::chr9:100615264..100615293,-#_ddab48d8677bcf806847f537fc8d3491p@chr9:100615264..100615293, -
4.22e-98FFCP PHASE1:Hg19::chr14:81421452..81421462,+#_ddab48d8677bcf806847f537fc8d3491p8@TSHR
4.22e-98FFCP PHASE2:Hg19::chr8:133880402..133880425,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133880402..133880425, +
4.22e-98FFCP PHASE1:Hg19::chr8:133894809..133894822,-#_ddab48d8677bcf806847f537fc8d3491p@chr8:133894809..133894822, -
4.22e-98FFCP PHASE1:Hg19::chr7:107302560..107302575,-#_ddab48d8677bcf806847f537fc8d3491p2@ENST00000449741
4.22e-98FFCP PHASE2:Hg19::chr8:133900622..133900639,+#_ddab48d8677bcf806847f537fc8d3491+, p@chr8:133900622..133900639
4.22e-98FFCP PHASE1:Hg19::chr18:24321768..24321782,-#_ddab48d8677bcf806847f537fc8d3491p@chr18:24321768..24321782, -
4.22e-98FFCP PHASE1:Hg19::chr8:133898827..133898844,+#_ddab48d8677bcf806847f537fc8d3491+, p@chr8:133898827..133898844
4.22e-98FFCP PHASE1:Hg19::chr6:150691626..150691644,+#_ddab48d8677bcf806847f537fc8d3491p@chr6:150691626..150691644, +
4.22e-98FFCP PHASE1:Hg19::chr8:133898951..133898986,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133898951..133898986, +
4.22e-98FFCP PHASE1:Hg19::chr8:133899540..133899551,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133899540..133899551, +
4.22e-98FFCP PHASE2:Hg19::chr18:24321768..24321782,-#_ddab48d8677bcf806847f537fc8d3491p@chr18:24321768..24321782, -
4.22e-98FFCP PHASE2:Hg19::chr14:81421452..81421462,+#_ddab48d8677bcf806847f537fc8d3491p8@TSHR
4.22e-98FFCP PHASE2:Hg19::chr8:133885349..133885365,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133885349..133885365, +
4.22e-98FFCP PHASE1:Hg19::chr6:150691647..150691660,+#_ddab48d8677bcf806847f537fc8d3491+, p@chr6:150691647..150691660
4.22e-98FFCP PHASE1:Hg19::chr8:133880402..133880425,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133880402..133880425, +
4.22e-98FFCP PHASE2:Hg19::chr8:133899540..133899551,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133899540..133899551, +
4.22e-98FFCP PHASE2:Hg19::chr8:133883748..133883766,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133883748..133883766, +
4.22e-98FFCP PHASE2:Hg19::chr6:154669280..154669293,-#_ddab48d8677bcf806847f537fc8d3491p@chr6:154669280..154669293, -
4.22e-98FFCP PHASE2:Hg19::chr8:133885382..133885403,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133885382..133885403, +
4.22e-98FFCP PHASE1:Hg19::chr16:29801543..29801555,+#_ddab48d8677bcf806847f537fc8d3491p7@KIF22
4.22e-98FFCP PHASE1:Hg19::chr8:133885349..133885365,+#_ddab48d8677bcf806847f537fc8d3491p@chr8:133885349..133885365, +
4.22e-98FFCP PHASE2:Hg19::chr7:107302560..107302575,-#_ddab48d8677bcf806847f537fc8d3491p2@ENST00000449741
4.22e-98FFCP PHASE1:Hg19::chr9:100615264..100615293,-#_ddab48d8677bcf806847f537fc8d3491p@chr9:100615264..100615293, -
4.22e-98FFCP PHASE2:Hg19::chr6:150691626..150691644,+#_ddab48d8677bcf806847f537fc8d3491p@chr6:150691626..150691644, +
4.22e-98FFCP PHASE2:Hg19::chr8:133894809..133894822,-#_ddab48d8677bcf806847f537fc8d3491p@chr8:133894809..133894822, -
2.34e-79FFCP PHASE1:Hg19::chr14:36645767..36645777,-#_be274978bacd5f59fc76f5c1b0e54f3ap2@ENST00000556013
2.34e-79FFCP PHASE2:Hg19::chr14:36645767..36645777,-#_be274978bacd5f59fc76f5c1b0e54f3ap2@ENST00000556013
3.49e-79FFCP PHASE1:Hg19::chr18:53858147..53858168,-#_8003ea9f6485554ad6a7659d42f5235ep1@ENST00000382897
3.49e-79FFCP PHASE2:Hg19::chr18:53858147..53858168,-#_8003ea9f6485554ad6a7659d42f5235ep1@ENST00000382897
5.22e-79FFCP PHASE1:Hg19::chr8:134015669..134015678,+#_420ba3c74fcda0764df3b392ad16e5b1p@chr8:134015669..134015678, +
5.22e-79FFCP PHASE1:Hg19::chr9:129184039..129184052,+#_420ba3c74fcda0764df3b392ad16e5b1p17@FAM125B
5.22e-79FFCP PHASE2:Hg19::chr12:101962128..101962133,+#_420ba3c74fcda0764df3b392ad16e5b1p19@MYBPC1
5.22e-79FFCP PHASE1:Hg19::chr14:81422021..81422032,+#_420ba3c74fcda0764df3b392ad16e5b1p6@TSHR
5.22e-79FFCP PHASE2:Hg19::chr9:129184039..129184052,+#_420ba3c74fcda0764df3b392ad16e5b1p17@FAM125B
5.22e-79FFCP PHASE1:Hg19::chr12:101962128..101962133,+#_420ba3c74fcda0764df3b392ad16e5b1p19@MYBPC1
5.22e-79FFCP PHASE2:Hg19::chr8:134144086..134144098,+#_420ba3c74fcda0764df3b392ad16e5b1p@chr8:134144086..134144098, +
5.22e-79FFCP PHASE2:Hg19::chr14:81422021..81422032,+#_420ba3c74fcda0764df3b392ad16e5b1p6@TSHR
5.22e-79FFCP PHASE2:Hg19::chr6:154669238..154669256,-#_420ba3c74fcda0764df3b392ad16e5b1p@chr6:154669238..154669256, -
5.22e-79FFCP PHASE2:Hg19::chr1:226321114..226321123,+#_420ba3c74fcda0764df3b392ad16e5b1p@chr1:226321114..226321123, +
5.22e-79FFCP PHASE2:Hg19::chr8:134015669..134015678,+#_420ba3c74fcda0764df3b392ad16e5b1p@chr8:134015669..134015678, +
5.22e-79FFCP PHASE1:Hg19::chr14:81421861..81421875,+#_420ba3c74fcda0764df3b392ad16e5b1p5@TSHR
5.22e-79FFCP PHASE1:Hg19::chr1:226321114..226321123,+#_420ba3c74fcda0764df3b392ad16e5b1p@chr1:226321114..226321123, +
5.22e-79FFCP PHASE1:Hg19::chr6:154669238..154669256,-#_420ba3c74fcda0764df3b392ad16e5b1p@chr6:154669238..154669256, -
5.22e-79FFCP PHASE2:Hg19::chr14:81421861..81421875,+#_420ba3c74fcda0764df3b392ad16e5b1p5@TSHR
5.22e-79FFCP PHASE1:Hg19::chr8:134144086..134144098,+#_420ba3c74fcda0764df3b392ad16e5b1p@chr8:134144086..134144098, +
7.79e-79FFCP PHASE1:Hg19::chr19:20068797..20068802,+#_7aecbf98e8dd33070d3ff0eb0f8ac4e8p@chr19:20068797..20068802, +
7.79e-79FFCP PHASE2:Hg19::chr19:20068797..20068802,+#_7aecbf98e8dd33070d3ff0eb0f8ac4e8p@chr19:20068797..20068802, +
1.16e-78FFCP PHASE2:Hg19::chr1:1848214..1848240,+#_9e677f1d811c1f809587be4befa37824p@chr1:1848214..1848240, +
1.16e-78FFCP PHASE1:Hg19::chrX:125953692..125953697,+#_9e677f1d811c1f809587be4befa37824p3@CXorf64
1.16e-78FFCP PHASE2:Hg19::chrX:125953692..125953697,+#_9e677f1d811c1f809587be4befa37824p3@CXorf64
1.16e-78FFCP PHASE1:Hg19::chr1:1848214..1848240,+#_9e677f1d811c1f809587be4befa37824p@chr1:1848214..1848240, +
1.45e-66FFCP PHASE1:Hg19::chr6:150498089..150498126,+#_c2039a9c501d420c9161be61623bf8a2p@chr6:150498089..150498126, +
1.45e-66FFCP PHASE2:Hg19::chr6:150498089..150498126,+#_c2039a9c501d420c9161be61623bf8a2p@chr6:150498089..150498126, +
2.84e-66FFCP PHASE1:Hg19::chr20:17608030..17608041,-#_56173dfbe46fa89d7ed9ed6623d56c35p@chr20:17608030..17608041, -
2.84e-66FFCP PHASE2:Hg19::chr14:81423482..81423496,+#_56173dfbe46fa89d7ed9ed6623d56c35p@chr14:81423482..81423496, +
2.84e-66FFCP PHASE2:Hg19::chr6:117597244..117597253,+#_56173dfbe46fa89d7ed9ed6623d56c35p@chr6:117597244..117597253, +
2.84e-66FFCP PHASE2:Hg19::chr20:17608030..17608041,-#_56173dfbe46fa89d7ed9ed6623d56c35p@chr20:17608030..17608041, -
2.84e-66FFCP PHASE1:Hg19::chr6:2744361..2744382,-#_56173dfbe46fa89d7ed9ed6623d56c35p@chr6:2744361..2744382, -
2.84e-66FFCP PHASE2:Hg19::chr6:2744361..2744382,-#_56173dfbe46fa89d7ed9ed6623d56c35p@chr6:2744361..2744382, -
2.84e-66FFCP PHASE1:Hg19::chr14:81423482..81423496,+#_56173dfbe46fa89d7ed9ed6623d56c35p@chr14:81423482..81423496, +
2.84e-66FFCP PHASE1:Hg19::chr6:117597244..117597253,+#_56173dfbe46fa89d7ed9ed6623d56c35p@chr6:117597244..117597253, +
3.96e-66FFCP PHASE1:Hg19::chr14:36990416..36990438,-#_31d9fa3764afb14f1582afd809951a07p4@NKX2-1
3.96e-66FFCP PHASE2:Hg19::chr8:133894129..133894154,+#_31d9fa3764afb14f1582afd809951a07p3@TG
3.96e-66FFCP PHASE1:Hg19::chr14:81423399..81423412,+#_31d9fa3764afb14f1582afd809951a07p@chr14:81423399..81423412, +
3.96e-66FFCP PHASE1:Hg19::chr8:133894129..133894154,+#_31d9fa3764afb14f1582afd809951a07p3@TG
3.96e-66FFCP PHASE1:Hg19::chr2:241079761..241079791,-#_31d9fa3764afb14f1582afd809951a07p3@OTOS
3.96e-66FFCP PHASE2:Hg19::chr7:137294342..137294381,-#_31d9fa3764afb14f1582afd809951a07p@chr7:137294342..137294381, -