Personal tools

UBERON:0000411

From FANTOM5_SSTAR

Revision as of 08:09, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:visual cortex
Namespace:FANTOM
Definition:"Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735]
Xrefs:
links:

BTO:0001857
EFO:0000916
EV:0100171
FMA:242644
GAID:679
[ 200px-Brodmann_areas_17_18_19.png 200px-Brodmann_areas_17_18_19.png]

MESH:A.08.186.211.730.885.213.571.735
Synonyms: "striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735]
"V1" RELATED [Wikipedia:Visual_cortex]
Comments:Editor note: merge with primary visual cortex? FMA and BTO treat as distinct
Alt_id: UBERON:BTO_0001857-FMA_242644

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002619(regional part of cerebral cortex)
part_of:UBERON:0002021(occipital lobe)



Children

is a:FF:10349-105D7 (visual cortex - wildtype),FF:10350-105D8 (visual cortex - Mecp knockout)
derives from:FF:0011268 (mouse visual cortex from wildtype- neonate N15 sample),FF:0011269 (mouse visual cortex from wildtype- neonate N30 sample),FF:0011270 (mouse visual cortex from wildtype- neonate N60-70 sample),FF:0011271 (mouse visual cortex from Mecp knockout- neonate N15 sample),FF:0011272 (mouse visual cortex from Mecp knockout- neonate N30 sample),FF:0011273 (mouse visual cortex from Mecp knockout- neonate N60-70 sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000411 (visual cortex), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.31e-86FFCP PHASE1:Mm9::chr2:7223539..7223546,-#_28381004ddd65ccc3aa357593d659c1fp@chr2:7223539..7223546, -
1.31e-86FFCP PHASE2:Mm9::chr2:7223539..7223546,-#_28381004ddd65ccc3aa357593d659c1fp@chr2:7223539..7223546, -
1.31e-86FFCP PHASE2:Mm9::chr11:17100262..17100269,+#_28381004ddd65ccc3aa357593d659c1fp@chr11:17100262..17100269, +
1.31e-86FFCP PHASE2:Mm9::chr18:40430194..40430203,+#_28381004ddd65ccc3aa357593d659c1fp@chr18:40430194..40430203, +
1.31e-86FFCP PHASE1:Mm9::chr13:42849190..42849201,+#_28381004ddd65ccc3aa357593d659c1fp@chr13:42849190..42849201, +
1.31e-86FFCP PHASE1:Mm9::chr6:80020704..80020735,+#_28381004ddd65ccc3aa357593d659c1fp@chr6:80020704..80020735, +
1.31e-86FFCP PHASE1:Mm9::chr18:40430194..40430203,+#_28381004ddd65ccc3aa357593d659c1fp@chr18:40430194..40430203, +
1.31e-86FFCP PHASE1:Mm9::chr1:126400744..126400756,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126400744..126400756, -
1.31e-86FFCP PHASE1:Mm9::chr1:126404292..126404301,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126404292..126404301, -
1.31e-86FFCP PHASE1:Mm9::chr1:126502309..126502340,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126502309..126502340, -
1.31e-86FFCP PHASE2:Mm9::chr1:126400744..126400756,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126400744..126400756, -
1.31e-86FFCP PHASE2:Mm9::chr1:126404292..126404301,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126404292..126404301, -
1.31e-86FFCP PHASE2:Mm9::chr1:126502309..126502340,-#_28381004ddd65ccc3aa357593d659c1fp@chr1:126502309..126502340, -
1.31e-86FFCP PHASE2:Mm9::chr13:42849190..42849201,+#_28381004ddd65ccc3aa357593d659c1fp@chr13:42849190..42849201, +
1.31e-86FFCP PHASE1:Mm9::chr11:17100262..17100269,+#_28381004ddd65ccc3aa357593d659c1fp@chr11:17100262..17100269, +
1.31e-86FFCP PHASE2:Mm9::chr6:80020704..80020735,+#_28381004ddd65ccc3aa357593d659c1fp@chr6:80020704..80020735, +
3.9e-79FFCP PHASE1:Mm9::chr7:99597472..99597476,+#_ea3f72708ce171e8187611568741f8afp@chr7:99597472..99597476, +
3.9e-79FFCP PHASE2:Mm9::chr2:20291839..20291846,+#_ea3f72708ce171e8187611568741f8afp@chr2:20291839..20291846, +
3.9e-79FFCP PHASE1:Mm9::chr8:17186907..17186917,-#_ea3f72708ce171e8187611568741f8afp@chr8:17186907..17186917, -
3.9e-79FFCP PHASE2:Mm9::chr8:17186907..17186917,-#_ea3f72708ce171e8187611568741f8afp@chr8:17186907..17186917, -
3.9e-79FFCP PHASE1:Mm9::chr2:20291839..20291846,+#_ea3f72708ce171e8187611568741f8afp@chr2:20291839..20291846, +
3.9e-79FFCP PHASE2:Mm9::chr16:6986792..6986801,+#_ea3f72708ce171e8187611568741f8af+, p@chr16:6986792..6986801
3.9e-79FFCP PHASE2:Mm9::chr7:52430433..52430443,+#_ea3f72708ce171e8187611568741f8afp@chr7:52430433..52430443, +
3.9e-79FFCP PHASE2:Mm9::chr15:20450265..20450266,+#_ea3f72708ce171e8187611568741f8afp@chr15:20450265..20450266, +
3.9e-79FFCP PHASE1:Mm9::chr14:40201667..40201703,-#_ea3f72708ce171e8187611568741f8afp@chr14:40201667..40201703, -
3.9e-79FFCP PHASE1:Mm9::chr15:20450265..20450266,+#_ea3f72708ce171e8187611568741f8af+, p@chr15:20450265..20450266
3.9e-79FFCP PHASE1:Mm9::chr16:6986792..6986801,+#_ea3f72708ce171e8187611568741f8afp@chr16:6986792..6986801, +
3.9e-79FFCP PHASE2:Mm9::chr7:90680238..90680241,-#_ea3f72708ce171e8187611568741f8afp@chr7:90680238..90680241, -
3.9e-79FFCP PHASE2:Mm9::chr4:76560610..76560659,-#_ea3f72708ce171e8187611568741f8afp@chr4:76560610..76560659, -
3.9e-79FFCP PHASE2:Mm9::chr4:77434471..77434475,-#_ea3f72708ce171e8187611568741f8afp@chr4:77434471..77434475, -
3.9e-79FFCP PHASE2:Mm9::chr4:77468821..77468823,-#_ea3f72708ce171e8187611568741f8afp@chr4:77468821..77468823, -
3.9e-79FFCP PHASE2:Mm9::chr7:99597472..99597476,+#_ea3f72708ce171e8187611568741f8afp@chr7:99597472..99597476, +
3.9e-79FFCP PHASE2:Mm9::chr1:126104837..126104853,-#_ea3f72708ce171e8187611568741f8afp@chr1:126104837..126104853, -
3.9e-79FFCP PHASE2:Mm9::chr1:126105041..126105050,-#_ea3f72708ce171e8187611568741f8af-, p@chr1:126105041..126105050
3.9e-79FFCP PHASE2:Mm9::chr1:126203760..126203764,-#_ea3f72708ce171e8187611568741f8afp@chr1:126203760..126203764, -
3.9e-79FFCP PHASE2:Mm9::chr1:126400758..126400783,-#_ea3f72708ce171e8187611568741f8afp@chr1:126400758..126400783, -
3.9e-79FFCP PHASE2:Mm9::chr1:126619902..126619921,-#_ea3f72708ce171e8187611568741f8afp@chr1:126619902..126619921, -
3.9e-79FFCP PHASE2:Mm9::chr1:126652982..126652992,-#_ea3f72708ce171e8187611568741f8afp@chr1:126652982..126652992, -
3.9e-79FFCP PHASE2:Mm9::chr1:126717072..126717109,-#_ea3f72708ce171e8187611568741f8afp@chr1:126717072..126717109, -
3.9e-79FFCP PHASE1:Mm9::chr7:52430433..52430443,+#_ea3f72708ce171e8187611568741f8afp@chr7:52430433..52430443, +
3.9e-79FFCP PHASE1:Mm9::chr7:90680238..90680241,-#_ea3f72708ce171e8187611568741f8afp@chr7:90680238..90680241, -
3.9e-79FFCP PHASE2:Mm9::chr14:40201667..40201703,-#_ea3f72708ce171e8187611568741f8afp@chr14:40201667..40201703, -
3.9e-79FFCP PHASE1:Mm9::chr4:76560610..76560659,-#_ea3f72708ce171e8187611568741f8afp@chr4:76560610..76560659, -
3.9e-79FFCP PHASE1:Mm9::chr4:77434471..77434475,-#_ea3f72708ce171e8187611568741f8afp@chr4:77434471..77434475, -
3.9e-79FFCP PHASE1:Mm9::chr4:77468821..77468823,-#_ea3f72708ce171e8187611568741f8afp@chr4:77468821..77468823, -
3.9e-79FFCP PHASE1:Mm9::chr1:126104837..126104853,-#_ea3f72708ce171e8187611568741f8afp@chr1:126104837..126104853, -
3.9e-79FFCP PHASE1:Mm9::chr1:126105041..126105050,-#_ea3f72708ce171e8187611568741f8afp@chr1:126105041..126105050, -
3.9e-79FFCP PHASE1:Mm9::chr1:126203760..126203764,-#_ea3f72708ce171e8187611568741f8afp@chr1:126203760..126203764, -
3.9e-79FFCP PHASE1:Mm9::chr1:126400758..126400783,-#_ea3f72708ce171e8187611568741f8af-, p@chr1:126400758..126400783
3.9e-79FFCP PHASE1:Mm9::chr1:126619902..126619921,-#_ea3f72708ce171e8187611568741f8afp@chr1:126619902..126619921, -
3.9e-79FFCP PHASE1:Mm9::chr1:126652982..126652992,-#_ea3f72708ce171e8187611568741f8afp@chr1:126652982..126652992, -
3.9e-79FFCP PHASE1:Mm9::chr1:126717072..126717109,-#_ea3f72708ce171e8187611568741f8afp@chr1:126717072..126717109, -
4.7e-79FFCP PHASE1:Mm9::chr1:126619952..126619959,-#_0032715cc9f03c61f3e5c653ef25184cp@chr1:126619952..126619959, -
4.7e-79FFCP PHASE2:Mm9::chr9:37352150..37352163,-#_0032715cc9f03c61f3e5c653ef25184cp@chr9:37352150..37352163, -
4.7e-79FFCP PHASE1:Mm9::chr9:37352150..37352163,-#_0032715cc9f03c61f3e5c653ef25184cp@chr9:37352150..37352163, -
4.7e-79FFCP PHASE1:Mm9::chr4:126885535..126885547,+#_0032715cc9f03c61f3e5c653ef25184cp@chr4:126885535..126885547, +
4.7e-79FFCP PHASE2:Mm9::chr1:126619952..126619959,-#_0032715cc9f03c61f3e5c653ef25184cp@chr1:126619952..126619959, -
4.7e-79FFCP PHASE2:Mm9::chr4:126885535..126885547,+#_0032715cc9f03c61f3e5c653ef25184cp@chr4:126885535..126885547, +
5.66e-79FFCP PHASE2:Mm9::chr1:126404318..126404329,-#_cd68e94da2b023c68ce71b2082225db7p@chr1:126404318..126404329, -
5.66e-79FFCP PHASE1:Mm9::chr1:126404318..126404329,-#_cd68e94da2b023c68ce71b2082225db7p@chr1:126404318..126404329, -
5.66e-79FFCP PHASE1:Mm9::chr2:129870267..129870276,+#_cd68e94da2b023c68ce71b2082225db7p@chr2:129870267..129870276, +
5.66e-79FFCP PHASE2:Mm9::chr2:129870267..129870276,+#_cd68e94da2b023c68ce71b2082225db7p@chr2:129870267..129870276, +
6.82e-79FFCP PHASE1:Mm9::chr18:40431328..40431331,+#_2551ba42d764e614995d3f490a140e5dp@chr18:40431328..40431331, +
6.82e-79FFCP PHASE2:Mm9::chr18:40431328..40431331,+#_2551ba42d764e614995d3f490a140e5dp@chr18:40431328..40431331, +
5.74e-78FFCP PHASE2:Mm9::chr4:76204951..76204975,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:76204951..76204975, -
5.74e-78FFCP PHASE1:Mm9::chr6:102215690..102215693,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:102215690..102215693, -
5.74e-78FFCP PHASE1:Mm9::chr6:110711128..110711143,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:110711128..110711143, +
5.74e-78FFCP PHASE2:Mm9::chr7:98325289..98325298,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:98325289..98325298, +
5.74e-78FFCP PHASE2:Mm9::chr2:62918160..62918168,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:62918160..62918168, -
5.74e-78FFCP PHASE1:Mm9::chr7:98325289..98325298,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:98325289..98325298, +
5.74e-78FFCP PHASE2:Mm9::chr6:102215690..102215693,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:102215690..102215693, -
5.74e-78FFCP PHASE2:Mm9::chr6:110711128..110711143,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr6:110711128..110711143, +
5.74e-78FFCP PHASE1:Mm9::chr2:42019112..42019120,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:42019112..42019120, -
5.74e-78FFCP PHASE2:Mm9::chr16:75308220..75308224,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr16:75308220..75308224, -
5.74e-78FFCP PHASE1:Mm9::chr2:62918160..62918168,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:62918160..62918168, -
5.74e-78FFCP PHASE2:Mm9::chr7:64568462..64568466,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:64568462..64568466, -
5.74e-78FFCP PHASE1:Mm9::chr10:109586641..109586671,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr10:109586641..109586671, -
5.74e-78FFCP PHASE2:Mm9::chr1:126099259..126099261,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126099259..126099261, -
5.74e-78FFCP PHASE2:Mm9::chr1:126136825..126136836,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126136825..126136836, -
5.74e-78FFCP PHASE2:Mm9::chr1:126311174..126311222,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126311174..126311222, -
5.74e-78FFCP PHASE2:Mm9::chr1:126461420..126461468,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126461420..126461468, -
5.74e-78FFCP PHASE1:Mm9::chr7:64568462..64568466,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr7:64568462..64568466, -
5.74e-78FFCP PHASE2:Mm9::chr1:156389511..156389544,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:156389511..156389544, -
5.74e-78FFCP PHASE2:Mm9::chr4:138013853..138013861,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:138013853..138013861, +
5.74e-78FFCP PHASE2:Mm9::chr9:37353524..37353532,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr9:37353524..37353532, +
5.74e-78FFCP PHASE2:Mm9::chr15:20964798..20964802,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr15:20964798..20964802, +
5.74e-78FFCP PHASE2:Mm9::chr2:42019112..42019120,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr2:42019112..42019120, -
5.74e-78FFCP PHASE1:Mm9::chr15:20964798..20964802,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr15:20964798..20964802, +
5.74e-78FFCP PHASE1:Mm9::chr16:75308220..75308224,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr16:75308220..75308224, -
5.74e-78FFCP PHASE1:Mm9::chr1:126099259..126099261,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126099259..126099261, -
5.74e-78FFCP PHASE1:Mm9::chr1:126136825..126136836,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126136825..126136836, -
5.74e-78FFCP PHASE1:Mm9::chr1:126311174..126311222,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126311174..126311222, -
5.74e-78FFCP PHASE1:Mm9::chr1:126461420..126461468,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:126461420..126461468, -
5.74e-78FFCP PHASE1:Mm9::chr1:156389511..156389544,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr1:156389511..156389544, -
5.74e-78FFCP PHASE2:Mm9::chr10:109586641..109586671,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr10:109586641..109586671, -
5.74e-78FFCP PHASE1:Mm9::chr4:138013853..138013861,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:138013853..138013861, +
5.74e-78FFCP PHASE1:Mm9::chr4:76204951..76204975,-#_fd91f49c231c81b5f0b4bd2cd359038dp@chr4:76204951..76204975, -
5.74e-78FFCP PHASE1:Mm9::chr9:37353524..37353532,+#_fd91f49c231c81b5f0b4bd2cd359038dp@chr9:37353524..37353532, +
6.62e-73FFCP PHASE2:Mm9::chr8:17372133..17372143,-#_96716259b1db4bee8be156d1763f1285p@chr8:17372133..17372143, -
6.62e-73FFCP PHASE2:Mm9::chr8:17380927..17380938,-#_96716259b1db4bee8be156d1763f1285p@chr8:17380927..17380938, -