Personal tools

UBERON:0000468: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0000468 |name=multi-cellular organism |namespace= |def="Anatomical structure that is an individual member of a species and consists of more than one ce...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000468
|alt_id=UBERON:CARO_0000012-XAO_0003004
|name=multi-cellular organism
|namespace=
|def="Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
|xref=AAO:0010026;;AEO:0000103;;AEO:0000191;;BILA:0000012;;BTO:0001489;;CARO:0000012;;EFO:0002906;;EHDAA:1;;EHDAA:9178;;EHDAA2:0003103;;EHDAA2:0003191;;EMAPA:25765;;EV:0100016;;FBbt:00000001;;FMA:256135;;galen:Organism;;HAO:0000012;;MA:0002405;;ncithesaurus:Whole_Organism;;NIF_GrossAnatomy:birnlex_18;;TADS:0000001;;TAO:0001094;;TGMA:0001832;;VHOG:0000671;;WBbt:0007833;;XAO:0003004;;ZFA:0001094
|is_a=UBERON:0000061
|synonym="adult mouse" EXACT [MA:0002405];;"body" EXACT [];;"Koerper" RELATED [BTO:0001489];;"organism" EXACT [];;"TS28" RELATED [MA:0002405];;"whole body" EXACT [BTO:0001489];;"whole organism" EXACT []
|comment=TODO - split body and mc organism? body continues after death stage
|comment=TODO - split body and mc organism? body continues after death stage
|alt_id=UBERON:CARO_0000012-XAO_0003004
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
|subset=uberon_slim;;upper_level
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000468
|is_a=UBERON:0010000
|is_obsolete=
|located_in=
|located_in=
|name=multi-cellular organism
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure that is an individual member of a species.[TAO]" xsd:string
|subset=uberon_slim;;upper_level
|synonym="adult mouse" EXACT [MA:0002405];;"body" EXACT [];;"Koerper" RELATED [BTO:0001489];;"organism" EXACT [];;"TS28" RELATED [MA:0002405];;"whole body" EXACT [BTO:0001489];;"whole organism" EXACT []
|union_of=
|xref=AAO:0010026;;AEO:0000103;;AEO:0000191;;BILA:0000012;;BTO:0001489;;CARO:0000012;;EFO:0002906;;EHDAA2:0003103;;EHDAA2:0003191;;EHDAA:1;;EHDAA:9178;;EMAPA:25765;;EV:0100016;;FBbt:00000001;;FMA:256135;;galen:Organism;;HAO:0000012;;MA:0002405;;ncithesaurus:Whole_Organism;;NIF_GrossAnatomy:birnlex_18;;TADS:0000001;;TAO:0001094;;TGMA:0001832;;VHOG:0000671;;WBbt:0007833;;XAO:0003004;;ZFA:0001094
}}
}}

Latest revision as of 17:09, 12 September 2014

Name:multi-cellular organism
Namespace:FANTOM
Definition:"Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
Xrefs:
links:

AAO:0010026
AEO:0000103
AEO:0000191
BILA:0000012
BTO:0001489
CARO:0000012
EFO:0002906
EHDAA2:0003103
EHDAA2:0003191
EHDAA:1
EHDAA:9178
EMAPA:25765
EV:0100016
FBbt:00000001
FMA:256135
galen:Organism
HAO:0000012
MA:0002405
ncithesaurus:Whole_Organism
NIF_GrossAnatomy:birnlex_18
TADS:0000001
TAO:0001094
TGMA:0001832
VHOG:0000671
WBbt:0007833
XAO:0003004

ZFA:0001094
Synonyms: "adult mouse" EXACT [MA:0002405]
"body" EXACT []
"Koerper" RELATED [BTO:0001489]
"organism" EXACT []
"TS28" RELATED [MA:0002405]
"whole body" EXACT [BTO:0001489]
"whole organism" EXACT []
Comments:TODO - split body and mc organism? body continues after death stage
Alt_id: UBERON:CARO_0000012-XAO_0003004
Subset: uberon_slim
upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0010000(multicellular anatomical structure)



Children

is a:FF:0000217 (chicken whole embryo),UBERON:0000922 (embryo),UBERON:0003100 (female organism),UBERON:0003101 (male organism),UBERON:0007023 (adult organism)
derives from:FF:0300111 (mouse whole body sample)
part of:UBERON:0000463 (organism substance),UBERON:0000467 (anatomical system),UBERON:0000475 (organism subdivision),UBERON:0000479 (tissue),UBERON:0000480 (anatomical group),UBERON:0001048 (primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000468 (multi-cellular organism), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is an individual member of a species.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.