Personal tools

UBERON:0000478

From FANTOM5_SSTAR

Jump to: navigation, search

Name:extraembryonic structure
Namespace:FANTOM
Definition:"Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH]
Xrefs:
links:

AAO:0010020
AEO:0000042
BILA:0000042
CARO:0000042
EHDAA2:0003042
EHDAA:46
EMAPA:16042
FBbt:00005835
FMA:85537
HAO:0000042
ncithesaurus:Extraembryonic_Structure
SCTID:314908006
TAO:0000020
TGMA:0001843
VHOG:0000292
XAO:0004005

ZFA:0000020
Synonyms: "extra-embryonic structure" EXACT []
"extraembryonic component" RELATED []
"extraembryonic tissue" RELATED []
Comments:see also conceptus extraembryonic component in EHDAA2
Alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000061(anatomical structure)
disjoint_from:UBERON:0002050(embryonic structure)
part_of:UBERON:0016887(entire extraembryonic component)



Children

is a:UBERON:0000920 (egg chorion),UBERON:0001987 (placenta),UBERON:0002331 (umbilical cord),UBERON:0005292 (extraembryonic tissue),UBERON:0005631 (extraembryonic membrane),UBERON:0005971 (amniotic fold),UBERON:0007806 (connecting stalk)
part of:FF:0000218 (chicken embryo extraembryonic tissue day7 HH32),FF:0000219 (chicken embryo extraembryonic tissue day15 HH41),CL:0000349 (extraembryonic cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000478 (extraembryonic structure), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.4e-90FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_4c4a71465ec68016fe7a84c055fff15fp1@ENST00000469806
4.4e-90FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_4c4a71465ec68016fe7a84c055fff15fp1@ENST00000469806
1.78e-89FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_54aa8bf4ff2c928af23fca873bdb2622p4@SLCO4A1
1.78e-89FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_54aa8bf4ff2c928af23fca873bdb2622p4@SLCO4A1
1.58e-86FFCP PHASE2:Mm9::chr1:193090931..193090940,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:193090931..193090940, +
1.58e-86FFCP PHASE2:Mm9::chr6:48879890..48879896,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@1600015I10Rik
1.58e-86FFCP PHASE1:Mm9::chr9:57927144..57927163,+#_91d2790787b49f99f30f6e59cf5f4cc1p19@Stra6
1.58e-86FFCP PHASE1:Mm9::chr1:71787899..71787904,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:71787899..71787904, -
1.58e-86FFCP PHASE2:Mm9::chr6:145765021..145765041,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:145765021..145765041, +
1.58e-86FFCP PHASE2:Mm9::chr15:78342035..78342046,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr15:78342035..78342046, -
1.58e-86FFCP PHASE1:Mm9::chr13:61265572..61265576,-#_91d2790787b49f99f30f6e59cf5f4cc1p2@Ctsr
1.58e-86FFCP PHASE1:Mm9::chr1:193090931..193090940,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:193090931..193090940, +
1.58e-86FFCP PHASE1:Mm9::chr7:17749305..17749310,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17749305..17749310, +
1.58e-86FFCP PHASE1:Mm9::chrX:136335507..136335518,+#_91d2790787b49f99f30f6e59cf5f4cc1p5@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr7:17798686..17798694,+#_91d2790787b49f99f30f6e59cf5f4cc1+, p@chr7:17798686..17798694
1.58e-86FFCP PHASE2:Mm9::chr13:33048652..33048685,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:33048652..33048685, +
1.58e-86FFCP PHASE2:Mm9::chr11:55223511..55223524,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr11:55223511..55223524, -
1.58e-86FFCP PHASE2:Mm9::chr14:102036767..102036774,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:102036767..102036774, -
1.58e-86FFCP PHASE2:Mm9::chr13:27337674..27337690,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27337674..27337690, +
1.58e-86FFCP PHASE1:Mm9::chr13:61040767..61040776,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61040767..61040776, -
1.58e-86FFCP PHASE2:Mm9::chr5:125523411..125523420,-#_91d2790787b49f99f30f6e59cf5f4cc1p24@Ncor2
1.58e-86FFCP PHASE1:Mm9::chr7:17788797..17788806,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Psg29
1.58e-86FFCP PHASE1:Mm9::chrX:136335520..136335531,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Cldn2
1.58e-86FFCP PHASE2:Mm9::chr13:61105387..61105403,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61105387..61105403, +
1.58e-86FFCP PHASE2:Mm9::chr7:17749305..17749310,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17749305..17749310, +
1.58e-86FFCP PHASE1:Mm9::chr6:48879890..48879896,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@1600015I10Rik
1.58e-86FFCP PHASE2:Mm9::chrX:136335482..136335502,+#_91d2790787b49f99f30f6e59cf5f4cc1p3@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr13:27337674..27337690,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27337674..27337690, +
1.58e-86FFCP PHASE1:Mm9::chr9:111108246..111108253,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr9:111108246..111108253, +
1.58e-86FFCP PHASE2:Mm9::chrX:141915185..141915200,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chrX:141915185..141915200, -
1.58e-86FFCP PHASE1:Mm9::chr1:63260883..63260896,-#_91d2790787b49f99f30f6e59cf5f4cc1p3@Gpr1
1.58e-86FFCP PHASE1:Mm9::chr14:26461997..26462039,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:26461997..26462039, +
1.58e-86FFCP PHASE1:Mm9::chr5:125523411..125523420,-#_91d2790787b49f99f30f6e59cf5f4cc1p24@Ncor2
1.58e-86FFCP PHASE2:Mm9::chr7:17788842..17788851,+#_91d2790787b49f99f30f6e59cf5f4cc1p2@Psg29
1.58e-86FFCP PHASE1:Mm9::chrX:141915185..141915200,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chrX:141915185..141915200, -
1.58e-86FFCP PHASE1:Mm9::chr11:55223511..55223524,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr11:55223511..55223524, -
1.58e-86FFCP PHASE2:Mm9::chr13:61040767..61040776,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61040767..61040776, -
1.58e-86FFCP PHASE2:Mm9::chr13:61265572..61265576,-#_91d2790787b49f99f30f6e59cf5f4cc1p2@Ctsr
1.58e-86FFCP PHASE2:Mm9::chr7:17798686..17798694,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr7:17798686..17798694, +
1.58e-86FFCP PHASE1:Mm9::chr6:97907033..97907043,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:97907033..97907043, +
1.58e-86FFCP PHASE1:Mm9::chr5:114862554..114862564,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:114862554..114862564, +
1.58e-86FFCP PHASE2:Mm9::chr7:17788797..17788806,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Psg29
1.58e-86FFCP PHASE2:Mm9::chrX:136335507..136335518,+#_91d2790787b49f99f30f6e59cf5f4cc1p5@Cldn2
1.58e-86FFCP PHASE2:Mm9::chr13:61041994..61042014,-#_91d2790787b49f99f30f6e59cf5f4cc1-, p@chr13:61041994..61042014
1.58e-86FFCP PHASE1:Mm9::chr13:27288509..27288515,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@Prl3c1
1.58e-86FFCP PHASE2:Mm9::chr13:27339701..27339760,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27339701..27339760, +
1.58e-86FFCP PHASE2:Mm9::chr9:57927144..57927163,+#_91d2790787b49f99f30f6e59cf5f4cc1p19@Stra6
1.58e-86FFCP PHASE1:Mm9::chr13:61041994..61042014,-#_91d2790787b49f99f30f6e59cf5f4cc1-, p@chr13:61041994..61042014
1.58e-86FFCP PHASE1:Mm9::chr13:33048652..33048685,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:33048652..33048685, +
1.58e-86FFCP PHASE2:Mm9::chr6:97907033..97907043,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:97907033..97907043, +
1.58e-86FFCP PHASE1:Mm9::chr13:27335609..27335622,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27335609..27335622, +
1.58e-86FFCP PHASE2:Mm9::chr13:27341334..27341356,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27341334..27341356, -
1.58e-86FFCP PHASE2:Mm9::chr1:63260883..63260896,-#_91d2790787b49f99f30f6e59cf5f4cc1p3@Gpr1
1.58e-86FFCP PHASE2:Mm9::chr5:115211954..115211984,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:115211954..115211984, -
1.58e-86FFCP PHASE1:Mm9::chr7:17788842..17788851,+#_91d2790787b49f99f30f6e59cf5f4cc1p2@Psg29
1.58e-86FFCP PHASE1:Mm9::chr13:61105387..61105403,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:61105387..61105403, +
1.58e-86FFCP PHASE2:Mm9::chrX:136335520..136335531,+#_91d2790787b49f99f30f6e59cf5f4cc1p4@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr14:102036767..102036774,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:102036767..102036774, -
1.58e-86FFCP PHASE2:Mm9::chr5:114862554..114862564,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:114862554..114862564, +
1.58e-86FFCP PHASE2:Mm9::chr14:26461997..26462039,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr14:26461997..26462039, +
1.58e-86FFCP PHASE2:Mm9::chr1:71787899..71787904,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr1:71787899..71787904, -
1.58e-86FFCP PHASE2:Mm9::chr9:111108246..111108253,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr9:111108246..111108253, +
1.58e-86FFCP PHASE2:Mm9::chr13:27288509..27288515,+#_91d2790787b49f99f30f6e59cf5f4cc1p1@Prl3c1
1.58e-86FFCP PHASE1:Mm9::chr13:27341334..27341356,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27341334..27341356, -
1.58e-86FFCP PHASE1:Mm9::chrX:136335482..136335502,+#_91d2790787b49f99f30f6e59cf5f4cc1p3@Cldn2
1.58e-86FFCP PHASE1:Mm9::chr15:78342035..78342046,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr15:78342035..78342046, -
1.58e-86FFCP PHASE2:Mm9::chr13:27335609..27335622,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27335609..27335622, +
1.58e-86FFCP PHASE1:Mm9::chr5:115211954..115211984,-#_91d2790787b49f99f30f6e59cf5f4cc1p@chr5:115211954..115211984, -
1.58e-86FFCP PHASE1:Mm9::chr6:145765021..145765041,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr6:145765021..145765041, +
1.58e-86FFCP PHASE1:Mm9::chr13:27339701..27339760,+#_91d2790787b49f99f30f6e59cf5f4cc1p@chr13:27339701..27339760, +
1.2e-83FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_a15e390c39e4e85e831ebe6b833a987cp21@ST5
1.2e-83FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_a15e390c39e4e85e831ebe6b833a987cp21@ST5
1.39e-83FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_899107337649f545d6fbc396f58e2d31p16@ST5
1.39e-83FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_899107337649f545d6fbc396f58e2d31p16@ST5
2.0e-83FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_ecd1c18dc236de508afe50526e6815ddp@chr2:237682990..237683009, +
2.0e-83FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_ecd1c18dc236de508afe50526e6815dd+, p@chr2:237682990..237683009
4.85e-82FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_b37d61f1e96b1e761fb2e653ff6cdfa7p@chr2:237683156..237683171, +
4.85e-82FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_b37d61f1e96b1e761fb2e653ff6cdfa7p@chr2:237683156..237683171, +
1.89e-81FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_1297bbfe4c8188a5c11c92814ffa49cep@chr19:36592982..36592993, +
1.89e-81FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_1297bbfe4c8188a5c11c92814ffa49cep@chr19:36592982..36592993, +
3.49e-78FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_37d7b37317238aa0d967ac82a3328a49p17@ST5
3.49e-78FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_37d7b37317238aa0d967ac82a3328a49p17@ST5
2.4e-75FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_ca492a39293c2c12b48f894455545947p@chr15:68344995..68345013, +
2.4e-75FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_ca492a39293c2c12b48f894455545947p@chr15:68344995..68345013, +
1.93e-73FFCP PHASE1:Hg19::chr2:25862154..25862172,-#_503967efe8d22cfc03a5bba2d5cac469p14@DTNB
1.93e-73FFCP PHASE2:Hg19::chr2:25862154..25862172,-#_503967efe8d22cfc03a5bba2d5cac469p14@DTNB
2.39e-73FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_69643ec5c1d3458e412957d09d79a902p@chr2:237683212..237683239, +
2.39e-73FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_69643ec5c1d3458e412957d09d79a902p@chr2:237683212..237683239, +
3.28e-70FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_29658aa5351d45309c5057f2064489acp@chr2:237682954..237682971, +
3.28e-70FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_29658aa5351d45309c5057f2064489acp@chr2:237682954..237682971, +
3.51e-70FFCP PHASE1:Hg19::chr13:43636294..43636306,+#_91e50d06609c409917b63c82c4fa7023p@chr13:43636294..43636306, +
3.51e-70FFCP PHASE2:Hg19::chr13:43636294..43636306,+#_91e50d06609c409917b63c82c4fa7023p@chr13:43636294..43636306, +
8.51e-69FFCP PHASE2:Hg19::chr19:36592925..36592948,+#_7836d5e142e6ebc087991264ab4a2358p@chr19:36592925..36592948, +
8.51e-69FFCP PHASE1:Hg19::chr19:36592925..36592948,+#_7836d5e142e6ebc087991264ab4a2358p@chr19:36592925..36592948, +
3.88e-66FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_378a3574081031f94d1002294d2c9622+, p@chr18:6286777..6286797
3.88e-66FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_378a3574081031f94d1002294d2c9622p@chr18:6286777..6286797, +
1.33e-65FFCP PHASE2:Mm9::chr13:61671471..61671495,-#_be6a0714e61b8f18390fbff5e6973618p1@Cts3
1.33e-65FFCP PHASE2:Mm9::chr1:63260849..63260860,-#_be6a0714e61b8f18390fbff5e6973618p4@Gpr1
1.33e-65FFCP PHASE1:Mm9::chr18:61265250..61265257,+#_be6a0714e61b8f18390fbff5e6973618p8@Csf1r
1.33e-65FFCP PHASE1:Mm9::chr9:123901463..123901472,-#_be6a0714e61b8f18390fbff5e6973618p@chr9:123901463..123901472, -