Personal tools

Difference between revisions of "UBERON:0000485"

From FANTOM5_SSTAR

Jump to: navigation, search
 
Line 13: Line 13:
 
|located_in=
 
|located_in=
 
|name=simple columnar epithelium
 
|name=simple columnar epithelium
|namespace=
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=
 
|part_of=

Latest revision as of 08:10, 12 September 2014

Name:simple columnar epithelium
Namespace:FANTOM
Definition:"Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Simple_columnar_epithelium]
Xrefs:
links:

AAO:0010063
AEO:0000068
BILA:0000068
CARO:0000068
EHDAA2:0003068
FBbt:00007027
FMA:45567
HAO:0000068
[ Gray1059.png Gray1059.png]
[ 200px-Gray1059.png 200px-Gray1059.png]
ncithesaurus:Simple_Columnar_Epithelium
TAO:0001496
XAO:0004008

ZFA:0001496
Synonyms: "columnar epithelium" EXACT [EHDAA2:0003068]
"columnar epithlium" EXACT [AEO:0000068]
"epithelium simplex columnare" EXACT []
"simple columnar epithelium" EXACT []
Alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0012274(columnar epithelium)



Children

is a:UBERON:0001277 (intestinal epithelium),UBERON:0001997 (olfactory epithelium),UBERON:0002031 (epithelium of bronchus),UBERON:0007497 (developing epithelial placode)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000485 (simple columnar epithelium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.63e-72FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_20d3e24d138e2f97617e8acc53747bb6p@chr17:46693370..46693378, +
7.63e-72FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_20d3e24d138e2f97617e8acc53747bb6p@chr17:46693370..46693378, +
4.29e-63FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_f47b805e032d159f11449d994684bc82p@chr8:122335239..122335244, +
4.29e-63FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_f47b805e032d159f11449d994684bc82p@chr8:122335239..122335244, +
2.02e-58FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_c3f59912537da0ca29411e99a7250f6cp@chr17:57201412..57201418, -
2.02e-58FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_c3f59912537da0ca29411e99a7250f6cp@chr17:57201412..57201418, -
3.89e-56FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_51abe6f490857572a7597040de1823c8p@chr4:155434167..155434177, +
3.89e-56FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_51abe6f490857572a7597040de1823c8p@chr4:155434167..155434177, +
2.49e-55FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_0a5e502836dd297ae8e3f866d7947de6p@chr8:64192378..64192389, +
2.49e-55FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_0a5e502836dd297ae8e3f866d7947de6p@chr8:64192378..64192389, +
2.97e-53FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_7652b27b09928ad062dcce167d452da3p@chr3:122215917..122215967, -
2.97e-53FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_7652b27b09928ad062dcce167d452da3p@chr3:122215917..122215967, -
5.19e-53FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_bb5f3459be531b367c14d2b4608650d3+, p@chr2:143738263..143738267
5.19e-53FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_bb5f3459be531b367c14d2b4608650d3p@chr2:143738263..143738267, +
3.5e-50FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_fb79677e5065acd44f879c6db322acc5p@chr5:135465906..135465912, +
3.5e-50FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_fb79677e5065acd44f879c6db322acc5p@chr5:135465906..135465912, +
8.87e-50FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_d85ad09178263a6e502c18888cf7a278p4@Leng9
8.87e-50FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_d85ad09178263a6e502c18888cf7a278p4@Leng9
1.7e-49FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_c0cbb2cf283e8cfa42581a9d51a35253p5@Leng9
1.7e-49FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_c0cbb2cf283e8cfa42581a9d51a35253p5@Leng9
2.26e-48FFCP PHASE1:Mm9::chr9:69315761..69315767,+#_8917e4f3bd83317878bd024c53ee29c5p@chr9:69315761..69315767, +
2.26e-48FFCP PHASE2:Mm9::chr9:69315761..69315767,+#_8917e4f3bd83317878bd024c53ee29c5p@chr9:69315761..69315767, +
1.34e-47FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_bba97d02752fdda6d70c501c6e0c4652p@chr12:86771033..86771037, -
1.34e-47FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_bba97d02752fdda6d70c501c6e0c4652p@chr12:86771033..86771037, -
1.54e-46FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_197ee53a2f4e7946f4eed2b83a6900d1p@chr5:145119593..145119596, +
1.54e-46FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_197ee53a2f4e7946f4eed2b83a6900d1p@chr5:145119593..145119596, +
2.02e-46FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_126ef5a0d8df98975063f6f7e19f8443p@chr13:49066571..49066574, -
2.02e-46FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_126ef5a0d8df98975063f6f7e19f8443p@chr13:49066571..49066574, -
3.03e-46FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_fdf1dbaf1fe4e1445c667e18615c9668p@chr11:96797681..96797709, -
3.03e-46FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_fdf1dbaf1fe4e1445c667e18615c9668p@chr11:96797681..96797709, -
5.14e-46FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_d221d279c81d41e36dd563b08c1dad23p@chr18:36576247..36576252, -
5.14e-46FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_d221d279c81d41e36dd563b08c1dad23p@chr18:36576247..36576252, -
8.93e-46FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_32d03b7d06767ae23684c5f8fd5d8bcep@chr9:66888939..66888949, +
8.93e-46FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_32d03b7d06767ae23684c5f8fd5d8bcep@chr9:66888939..66888949, +
9.75e-45FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_797e59de150583da8fa3a889d86af3abp@chr9:35801527..35801540, +
9.75e-45FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_797e59de150583da8fa3a889d86af3abp@chr9:35801527..35801540, +
1.39e-43FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_742fd2a5303950f9610ed6e844ebdafbp@chr7:52317191..52317193, +
1.39e-43FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_742fd2a5303950f9610ed6e844ebdafbp@chr7:52317191..52317193, +
1.74e-43FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_275695f35b4f699d2f94fb170614f736p@chr5:135442713..135442733, +
1.74e-43FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_275695f35b4f699d2f94fb170614f736p@chr5:135442713..135442733, +
2.14e-43FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_20cd4a444eba5e82e8fdb8191284f212p@chr2:38781010..38781017, +
2.14e-43FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_20cd4a444eba5e82e8fdb8191284f212p@chr2:38781010..38781017, +
1.22e-42FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_c67d067ae6b275ebafe82afdd9c3979fp@chr10:80565428..80565433, +
1.22e-42FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_c67d067ae6b275ebafe82afdd9c3979fp@chr10:80565428..80565433, +
2.27e-42FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_9d16b62671a0b6ee9866a03d6fbe7763p@chr11:35759012..35759018, +
2.27e-42FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_9d16b62671a0b6ee9866a03d6fbe7763p@chr11:35759012..35759018, +
2.91e-42FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_cc460b2210663dcf2426b3bca782d4fep@chr18:66636209..66636215, -
2.91e-42FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_cc460b2210663dcf2426b3bca782d4fep@chr18:66636209..66636215, -
3.29e-42FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_9998eb673505dd6a3d667b8de865ae89p@chr16:78268076..78268083, -
3.29e-42FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_9998eb673505dd6a3d667b8de865ae89p@chr16:78268076..78268083, -
5.97e-41FFCP PHASE1:Mm9::chr1:88423123..88423134,-#_1d6e686a246b0de347198109b842e2aa-, p@chr1:88423123..88423134
5.97e-41FFCP PHASE2:Mm9::chr1:88423123..88423134,-#_1d6e686a246b0de347198109b842e2aap@chr1:88423123..88423134, -
6.63e-41FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_2989b78f9b5b30683c9c0da3a3bc738d+, p@chr16:30055801..30055806
6.63e-41FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_2989b78f9b5b30683c9c0da3a3bc738dp@chr16:30055801..30055806, +
6.83e-41FFCP PHASE1:Mm9::chr3:89262676..89262696,-#_92da414940609762803f27476f57510fp@chr3:89262676..89262696, -
6.83e-41FFCP PHASE2:Mm9::chr3:89262676..89262696,-#_92da414940609762803f27476f57510fp@chr3:89262676..89262696, -
9.12e-41FFCP PHASE1:Mm9::chr7:19814309..19814320,+#_9c19f8b0a22797e98434eb50248aa858p@chr7:19814309..19814320, +
9.12e-41FFCP PHASE2:Mm9::chr7:19814309..19814320,+#_9c19f8b0a22797e98434eb50248aa858p@chr7:19814309..19814320, +
1.25e-40FFCP PHASE2:Mm9::chr16:91548532..91548555,-#_45dff7018f3b108974198310a194011fp@chr16:91548532..91548555, -
1.25e-40FFCP PHASE1:Mm9::chr16:91548532..91548555,-#_45dff7018f3b108974198310a194011fp@chr16:91548532..91548555, -
3.99e-40FFCP PHASE1:Mm9::chr15:77670701..77670706,+#_4a4bc1934ffc3f2dd8375d88dc24917dp@chr15:77670701..77670706, +
3.99e-40FFCP PHASE2:Mm9::chr15:77670701..77670706,+#_4a4bc1934ffc3f2dd8375d88dc24917dp@chr15:77670701..77670706, +
6.64e-40FFCP PHASE2:Mm9::chr3:126314780..126314810,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr3:126314780..126314810, -
6.64e-40FFCP PHASE1:Mm9::chr5:32270354..32270364,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr5:32270354..32270364, -
6.64e-40FFCP PHASE1:Mm9::chr3:126314780..126314810,-#_d0f77e693be56e5eb8d3a3b9004c32d1-, p@chr3:126314780..126314810
6.64e-40FFCP PHASE2:Mm9::chr5:32270354..32270364,-#_d0f77e693be56e5eb8d3a3b9004c32d1p@chr5:32270354..32270364, -
2.17e-39FFCP PHASE1:Mm9::chr12:111682896..111682907,+#_e07289f41c78e98929f7a36977fa0d58p@chr12:111682896..111682907, +
2.17e-39FFCP PHASE2:Mm9::chr12:111682896..111682907,+#_e07289f41c78e98929f7a36977fa0d58p@chr12:111682896..111682907, +
2.66e-39FFCP PHASE2:Mm9::chr1:90912298..90912303,+#_bcb0ef12a11eae5f4b0d2209a4bd0b34p3@1700067G17Rik
2.66e-39FFCP PHASE1:Mm9::chr1:90912298..90912303,+#_bcb0ef12a11eae5f4b0d2209a4bd0b34p3@1700067G17Rik
2.73e-39FFCP PHASE1:Mm9::chr2:84491058..84491102,+#_992d59fea71cbd47bf5e57e599cc49c5p@chr2:84491058..84491102, +
2.73e-39FFCP PHASE2:Mm9::chr2:84491058..84491102,+#_992d59fea71cbd47bf5e57e599cc49c5p@chr2:84491058..84491102, +
3.46e-39FFCP PHASE1:Mm9::chr15:100568814..100568821,-#_1f1b10aaff8d0c4a2454ea0d444b37afp@chr15:100568814..100568821, -
3.46e-39FFCP PHASE2:Mm9::chr15:100568814..100568821,-#_1f1b10aaff8d0c4a2454ea0d444b37afp@chr15:100568814..100568821, -
1.14e-38FFCP PHASE2:Mm9::chr2:167904248..167904260,+#_3af5dd4ceb0ed4adcfa47dd8a1533406p@chr2:167904248..167904260, +
1.14e-38FFCP PHASE1:Mm9::chr2:167904248..167904260,+#_3af5dd4ceb0ed4adcfa47dd8a1533406p@chr2:167904248..167904260, +
1.26e-38FFCP PHASE2:Mm9::chr10:19251573..19251584,+#_3ad046d75c56d81cdcc0ebf16df8144bp@chr10:19251573..19251584, +
1.26e-38FFCP PHASE1:Mm9::chr10:19251573..19251584,+#_3ad046d75c56d81cdcc0ebf16df8144bp@chr10:19251573..19251584, +
1.88e-38FFCP PHASE2:Mm9::chr9:66888952..66888964,+#_c9a58d650dcf00a3a2e13717f0fdb224p@chr9:66888952..66888964, +
1.88e-38FFCP PHASE1:Mm9::chr9:66888952..66888964,+#_c9a58d650dcf00a3a2e13717f0fdb224p@chr9:66888952..66888964, +
5.07e-38FFCP PHASE2:Mm9::chr1:36331417..36331462,+#_2d1b3fac92cc1f1a22f55ebbcaeb511bp@chr1:36331417..36331462, +
5.07e-38FFCP PHASE1:Mm9::chr1:36331417..36331462,+#_2d1b3fac92cc1f1a22f55ebbcaeb511bp@chr1:36331417..36331462, +
7.0e-37FFCP PHASE1:Mm9::chr8:126155114..126155118,+#_2668b6b21bd74f9012d7fbcdfa87142ep1@uc009nwl.1
7.0e-37FFCP PHASE2:Mm9::chr15:83305098..83305104,+#_2668b6b21bd74f9012d7fbcdfa87142ep@chr15:83305098..83305104, +
7.0e-37FFCP PHASE1:Mm9::chr15:83305098..83305104,+#_2668b6b21bd74f9012d7fbcdfa87142ep@chr15:83305098..83305104, +
7.0e-37FFCP PHASE2:Mm9::chr8:126155114..126155118,+#_2668b6b21bd74f9012d7fbcdfa87142ep1@uc009nwl.1
1.47e-36FFCP PHASE2:Mm9::chr7:20335303..20335317,+#_78acfe9601bcb187575582cbd063b0ffp@chr7:20335303..20335317, +
1.47e-36FFCP PHASE1:Mm9::chr7:20335303..20335317,+#_78acfe9601bcb187575582cbd063b0ffp@chr7:20335303..20335317, +
1.61e-36FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_3b0b23e3b0ae6a656963e5a6f96bd93ep@chr5:135442349..135442362, -
1.61e-36FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_3b0b23e3b0ae6a656963e5a6f96bd93ep@chr5:135442349..135442362, -
2.8e-36FFCP PHASE1:Mm9::chrX:96331285..96331289,-#_abe8129c850f1947dc3861bf34bf77bep@chrX:96331285..96331289, -
2.8e-36FFCP PHASE2:Mm9::chrX:96331285..96331289,-#_abe8129c850f1947dc3861bf34bf77bep@chrX:96331285..96331289, -
3.43e-36FFCP PHASE1:Mm9::chr5:145015979..145015991,-#_162d0e8b1bf259b48abd955dd8bc7563p@chr5:145015979..145015991, -
3.43e-36FFCP PHASE2:Mm9::chr4:62163210..62163216,-#_162d0e8b1bf259b48abd955dd8bc7563p3@Hdhd3
3.43e-36FFCP PHASE1:Mm9::chr4:62163210..62163216,-#_162d0e8b1bf259b48abd955dd8bc7563p3@Hdhd3
3.43e-36FFCP PHASE2:Mm9::chr5:145015979..145015991,-#_162d0e8b1bf259b48abd955dd8bc7563p@chr5:145015979..145015991, -
4.38e-36FFCP PHASE2:Mm9::chr7:29382208..29382215,+#_37beb8bc87e7caf32034b0f6a3eb02c3p@chr7:29382208..29382215, +
4.38e-36FFCP PHASE1:Mm9::chr7:29382208..29382215,+#_37beb8bc87e7caf32034b0f6a3eb02c3p@chr7:29382208..29382215, +
5.78e-36FFCP PHASE2:Mm9::chr14:73507116..73507118,+#_e8be2b4aa0a65058c510e685507dfd61p@chr14:73507116..73507118, +
5.78e-36FFCP PHASE1:Mm9::chr14:73507116..73507118,+#_e8be2b4aa0a65058c510e685507dfd61p@chr14:73507116..73507118, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[CARO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.