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{{UBERON
 
{{UBERON
|id=UBERON:0000970
+
|alt_id=UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
|name=eye
+
|anatomical_img_id=FMA:54448
|namespace=
 
|def="An organ that detects light." [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
 
|xref=BILA:0000017;;BTO:0000439;;EFO:0000827;;EV:0100336;;FBbt:00005162;;GAID:69;;MAT:0000140;;MESH:A.01.456.505.420;;MIAA:0000140;;OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
 
|is_a=UBERON:0000020
 
|synonym="light-detecting organ" RELATED [];;"photoreceptor" BROAD [];;"visual apparatus" RELATED [EV:0100336]
 
 
|comment=Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
 
|comment=Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
|alt_id=UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="An organ that detects light." [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
|subset=functional_classification;;major_organ;;organ_slim;;uberon_slim
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0000970
 +
|is_a=UBERON:0000020
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=eye
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=UBERON:0002104
 
|part_of=UBERON:0002104
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=functional_classification;;major_organ;;organ_slim;;uberon_slim
|preceded_by=
+
|synonym="light-detecting organ" RELATED [];;"photoreceptor" BROAD [];;"visual apparatus" RELATED [EV:0100336]
 +
|union_of=
 +
|xref=BILA:0000017;;BTO:0000439;;EFO:0000827;;EV:0100336;;FBbt:00005162;;GAID:69;;MAT:0000140;;MESH:A.01.456.505.420;;MIAA:0000140;;OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
 
}}
 
}}

Latest revision as of 08:12, 12 September 2014

Name:eye
Namespace:FANTOM
Definition:"An organ that detects light." UBERON:cjm, Wikipedia:Eye
Xrefs:
links:

BILA:0000017
BTO:0000439
EFO:0000827
EV:0100336
FBbt:00005162
GAID:69
MAT:0000140
MESH:A.01.456.505.420
MIAA:0000140

OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
Synonyms: "light-detecting organ" RELATED []
"photoreceptor" BROAD []
"visual apparatus" RELATED [EV:0100336]
Comments:Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
Alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
Subset: functional_classification
major_organ
organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000020(sense organ)
part_of:UBERON:0002104(visual system)



Children

is a:UBERON:0000047 (simple eye)
part of:UBERON:0005388 (photoreceptor array),UBERON:0005389 (transparent eye structure),UBERON:0007625 (pigment epithelium of eye),FF:0010054 (human eye - fetal sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000970 (eye), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_6ebe97cbb151b6a21ff99eebc0683341p5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_6ebe97cbb151b6a21ff99eebc0683341p5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_6ebe97cbb151b6a21ff99eebc0683341p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_6ebe97cbb151b6a21ff99eebc0683341p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_6ebe97cbb151b6a21ff99eebc0683341p6@Celf1
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_6ebe97cbb151b6a21ff99eebc0683341p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_6ebe97cbb151b6a21ff99eebc0683341p6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_6ebe97cbb151b6a21ff99eebc0683341p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_6ebe97cbb151b6a21ff99eebc0683341p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_6ebe97cbb151b6a21ff99eebc0683341p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_6ebe97cbb151b6a21ff99eebc0683341p1@Mir184
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_6ebe97cbb151b6a21ff99eebc0683341p1@Mir184
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_6ebe97cbb151b6a21ff99eebc0683341p4@Dct
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_6ebe97cbb151b6a21ff99eebc0683341p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_6ebe97cbb151b6a21ff99eebc0683341p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_6ebe97cbb151b6a21ff99eebc0683341-, p@chr16:21743134..21743139
3.94e-79FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_48d94ef5e848a5ad5e6f5129a7550e88p10@SIX3
3.94e-79FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_48d94ef5e848a5ad5e6f5129a7550e88p10@SIX3
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_6f5b0954fbf777ea9de596bcf7b09d5fp@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_6f5b0954fbf777ea9de596bcf7b09d5fp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_6f5b0954fbf777ea9de596bcf7b09d5fp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_6f5b0954fbf777ea9de596bcf7b09d5fp@chr7:64675015..64675028, +
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_55ed5a199a03b1abe53b1814bd42b045p@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_55ed5a199a03b1abe53b1814bd42b045p6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_55ed5a199a03b1abe53b1814bd42b045p@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_55ed5a199a03b1abe53b1814bd42b045p6@Pax6
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_413ad474d5e4eb080d4e367ec0497437p1@4933429O19Rik
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_413ad474d5e4eb080d4e367ec0497437p1@4933429O19Rik
4.97e-77FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_8c68c2ad39b4567974f60f2741579a91p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_8c68c2ad39b4567974f60f2741579a91p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_8c68c2ad39b4567974f60f2741579a91p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_8c68c2ad39b4567974f60f2741579a91p1@Pdc
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_8c68c2ad39b4567974f60f2741579a91p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_8c68c2ad39b4567974f60f2741579a91p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_8c68c2ad39b4567974f60f2741579a91p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_8c68c2ad39b4567974f60f2741579a91p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_8c68c2ad39b4567974f60f2741579a91p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_8c68c2ad39b4567974f60f2741579a91p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_8c68c2ad39b4567974f60f2741579a91p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_8c68c2ad39b4567974f60f2741579a91p1@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_8c68c2ad39b4567974f60f2741579a91p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_8c68c2ad39b4567974f60f2741579a91p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_8c68c2ad39b4567974f60f2741579a91p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_8c68c2ad39b4567974f60f2741579a91p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_8c68c2ad39b4567974f60f2741579a91p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_8c68c2ad39b4567974f60f2741579a91p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_8c68c2ad39b4567974f60f2741579a91p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_8c68c2ad39b4567974f60f2741579a91p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_8c68c2ad39b4567974f60f2741579a91p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_8c68c2ad39b4567974f60f2741579a91p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_8c68c2ad39b4567974f60f2741579a91p1@Gm4792
4.97e-77FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_8c68c2ad39b4567974f60f2741579a91p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_8c68c2ad39b4567974f60f2741579a91p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_8c68c2ad39b4567974f60f2741579a91p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_8c68c2ad39b4567974f60f2741579a91p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_8c68c2ad39b4567974f60f2741579a91p3@Rrh
4.97e-77FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_8c68c2ad39b4567974f60f2741579a91p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_8c68c2ad39b4567974f60f2741579a91p1@Opn4
4.97e-77FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_8c68c2ad39b4567974f60f2741579a91p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_8c68c2ad39b4567974f60f2741579a91p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_8c68c2ad39b4567974f60f2741579a91p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_8c68c2ad39b4567974f60f2741579a91p2@Cryga
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_8c68c2ad39b4567974f60f2741579a91p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_8c68c2ad39b4567974f60f2741579a91p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_8c68c2ad39b4567974f60f2741579a91p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_8c68c2ad39b4567974f60f2741579a91p@chr5:112688342..112688357, +