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{{UBERON
{{UBERON
|id=UBERON:0001041
|alt_id=UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
|name=foregut
|namespace=
|def="Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
|xref=AAO:0011042;;BILA:0000085;;BTO:0000507;;EHDAA:520;;EHDAA2:0000557;;EMAPA:16548;;FBbt:00005379;;FMA:45616;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png;;MA:0001526;;ncithesaurus:Foregut;;SCTID:361409009;;TGMA:0001014;;VHOG:0000285;;XAO:0000232
|is_a=UBERON:0000077;;UBERON:0004921
|synonym=
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
|comment=Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
|alt_id=UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
|subset=developmental_classification;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003104
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001041
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=foregut
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=developmental_classification;;uberon_slim
|synonym="praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut]
|union_of=
|xref=AAO:0011042;;BILA:0000085;;BTO:0000507;;EHDAA2:0000557;;EHDAA:520;;EMAPA:16548;;FBbt:00005379;;FMA:45616;;http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png;;MA:0001526;;ncithesaurus:Foregut;;SCTID:361409009;;TGMA:0001014;;VHOG:0000285;;XAO:0000232
}}
}}

Latest revision as of 17:15, 12 September 2014

Name:foregut
Namespace:FANTOM
Definition:"Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
Xrefs:
links:

AAO:0011042
BILA:0000085
BTO:0000507
EHDAA2:0000557
EHDAA:520
EMAPA:16548
FBbt:00005379
FMA:45616
[ Gray27.png Gray27.png]
[ 200px-Gray27.png 200px-Gray27.png]
MA:0001526
ncithesaurus:Foregut
SCTID:361409009
TGMA:0001014
VHOG:0000285

XAO:0000232
Synonyms: "praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut]
Comments:Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
Alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
Subset: developmental_classification
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)



Children

develops from:UBERON:0000115 (lung epithelium),UBERON:0001043 (esophagus),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004908 (upper digestive tract),UBERON:0005597 (lung primordium)
part of:UBERON:0000945 (stomach),UBERON:0003258 (endoderm of foregut),UBERON:0003294 (gland of foregut),UBERON:0009143 (esophageal region),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015833 (foregut epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001041 (foregut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.14e-28FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_689a0fb91bc5a1df5c43e636b781aa70p1@FOXA1
1.14e-28FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_689a0fb91bc5a1df5c43e636b781aa70p1@FOXA1
9.69e-28FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_db9e5ad693d5ad724ef4507ce3d0c4cbp2@ALDH3A1
9.69e-28FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_db9e5ad693d5ad724ef4507ce3d0c4cbp2@ALDH3A1
6.01e-27FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_b84b2db4827b9c517e0ac6cb306715a8p1@UGT1A7
6.01e-27FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_b84b2db4827b9c517e0ac6cb306715a8p1@UGT1A7
9.26e-27FFCP PHASE1:Hg19::chr8:128231080..128231222,-#_bc5d717a55b126cd43d727b65df52cafp1@ENST00000500112, p1@uc003ysa.1
9.26e-27FFCP PHASE2:Hg19::chr8:128231080..128231222,-#_bc5d717a55b126cd43d727b65df52cafp1@ENST00000500112, p1@uc003ysa.1
3.81e-26FFCP PHASE2:Hg19::chr17:19651654..19651665,-#_ebd1c7c2b52384761102e22ff9163545p3@ALDH3A1
3.81e-26FFCP PHASE1:Hg19::chr17:19651654..19651665,-#_ebd1c7c2b52384761102e22ff9163545p3@ALDH3A1
6.73e-26FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_0187bd4fb18cdc517938cb41f113d0d0p1@ESRP2
6.73e-26FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_0187bd4fb18cdc517938cb41f113d0d0p1@ESRP2
3.18e-25FFCP PHASE1:Hg19::chr6:64281946..64281977,+#_178fb5e5855507c9a72949ecdc23fca7p12@PTP4A1
3.18e-25FFCP PHASE2:Hg19::chr6:64281946..64281977,+#_178fb5e5855507c9a72949ecdc23fca7p12@PTP4A1
1.33e-24FFCP PHASE2:Hg19::chr2:238592039..238592054,+#_8684fb1c2c0f56c9583fa1bd87997329p4@LRRFIP1
1.33e-24FFCP PHASE1:Hg19::chr2:238592039..238592054,+#_8684fb1c2c0f56c9583fa1bd87997329p4@LRRFIP1
2.5e-24FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_64ae6044a87507c1ce54a398eb3955c7p1@MYO5B
2.5e-24FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_64ae6044a87507c1ce54a398eb3955c7p1@MYO5B
6.79e-24FFCP PHASE1:Hg19::chr4:41361616..41361632,+#_5e9bf0a8ecd2102ff273b2ef1adc19acp8@LIMCH1
6.79e-24FFCP PHASE2:Hg19::chr4:41361616..41361632,+#_5e9bf0a8ecd2102ff273b2ef1adc19acp8@LIMCH1
8.3e-24FFCP PHASE1:Hg19::chr9:124499430..124499462,+#_ca75ed94f9bbccb1e3aacc939f3d1036p@chr9:124499430..124499462, +
8.3e-24FFCP PHASE2:Hg19::chr9:124499430..124499462,+#_ca75ed94f9bbccb1e3aacc939f3d1036p@chr9:124499430..124499462, +
1.18e-23FFCP PHASE1:Hg19::chr4:41361634..41361643,+#_1fc3978728b0660a32738c4481394d4cp19@LIMCH1
1.18e-23FFCP PHASE2:Hg19::chr4:41361634..41361643,+#_1fc3978728b0660a32738c4481394d4cp19@LIMCH1
3.83e-23FFCP PHASE2:Hg19::chr2:211543115..211543126,+#_29adadf836470ec0c04f19b89bff3953p@chr2:211543115..211543126, +
3.83e-23FFCP PHASE1:Hg19::chr2:211543115..211543126,+#_29adadf836470ec0c04f19b89bff3953p@chr2:211543115..211543126, +
5.47e-23FFCP PHASE1:Hg19::chr4:41361774..41361783,+#_28383f0966746aa3fe21641967a7fb39p26@LIMCH1
5.47e-23FFCP PHASE2:Hg19::chr4:41361774..41361783,+#_28383f0966746aa3fe21641967a7fb39p26@LIMCH1
5.63e-23FFCP PHASE1:Mm9::chr16:34807407..34807430,+#_62bb155efe3d664c74c3ffbb95ff0d63p@chr16:34807407..34807430, +
5.63e-23FFCP PHASE2:Mm9::chr16:34807407..34807430,+#_62bb155efe3d664c74c3ffbb95ff0d63p@chr16:34807407..34807430, +
1.03e-22FFCP PHASE2:Hg19::chr1:207263643..207263662,+#_1dc8c57ff1796534f8ccb23b2b3b0e65p@chr1:207263643..207263662, +
1.03e-22FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_1dc8c57ff1796534f8ccb23b2b3b0e65p3@CLDN7
1.03e-22FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_1dc8c57ff1796534f8ccb23b2b3b0e65p3@CLDN7
1.03e-22FFCP PHASE1:Hg19::chr1:207263643..207263662,+#_1dc8c57ff1796534f8ccb23b2b3b0e65p@chr1:207263643..207263662, +
1.37e-22FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_0f4781060b0aac8774d73b2f657164f9p1@TMEM184A
1.37e-22FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_0f4781060b0aac8774d73b2f657164f9p1@TMEM184A
1.75e-22FFCP PHASE1:Hg19::chr6:64282212..64282247,+#_54b8a8882684a0ab1b8733afbbab9610p19@PTP4A1
1.75e-22FFCP PHASE2:Hg19::chr6:64282212..64282247,+#_54b8a8882684a0ab1b8733afbbab9610p19@PTP4A1
2.01e-22FFCP PHASE2:Mm9::chr2:91034924..91034946,-#_cd3442e5463e864aebab3d4129b66262p2@Nr1h3
2.01e-22FFCP PHASE1:Mm9::chr2:91034924..91034946,-#_cd3442e5463e864aebab3d4129b66262p2@Nr1h3
2.02e-22FFCP PHASE1:Hg19::chr3:161318448..161318456,+#_2414134c6c44a83e6b35dc676bd68cdap@chr3:161318448..161318456, +
2.02e-22FFCP PHASE2:Hg19::chr3:161318448..161318456,+#_2414134c6c44a83e6b35dc676bd68cdap@chr3:161318448..161318456, +
2.04e-22FFCP PHASE2:Hg19::chr2:211466992..211467008,+#_1d6a00d1e6b29bec23bd441eb9a51d2bp@chr2:211466992..211467008, +
2.04e-22FFCP PHASE1:Hg19::chr2:211466992..211467008,+#_1d6a00d1e6b29bec23bd441eb9a51d2bp@chr2:211466992..211467008, +
2.58e-22FFCP PHASE2:Hg19::chr2:226378208..226378213,+#_2715ef31bf1fd7bbdb0eaf743a4f511ep@chr2:226378208..226378213, +
2.58e-22FFCP PHASE1:Hg19::chr2:226378208..226378213,+#_2715ef31bf1fd7bbdb0eaf743a4f511ep@chr2:226378208..226378213, +
9.27e-22FFCP PHASE1:Mm9::chr1:173697275..173697301,+#_820e6386b8a2d8c32818320549304bf8p1@Slamf1
9.27e-22FFCP PHASE2:Mm9::chr1:173697275..173697301,+#_820e6386b8a2d8c32818320549304bf8p1@Slamf1
1.27e-21FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_69921bb903a14d1da12cc926bee0f981p2@LMO7
1.27e-21FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_69921bb903a14d1da12cc926bee0f981p2@LMO7
1.3e-21FFCP PHASE1:Hg19::chr2:234296792..234296806,+#_31c63f5141925e7944d275d221f81841p13@DGKD
1.3e-21FFCP PHASE2:Hg19::chr2:234296792..234296806,+#_31c63f5141925e7944d275d221f81841p13@DGKD
1.56e-21FFCP PHASE1:Mm9::chr11:61474548..61474552,+#_be42603dd8e19dac17e644960de8588dp@chr11:61474548..61474552, +
1.56e-21FFCP PHASE2:Mm9::chr11:61474548..61474552,+#_be42603dd8e19dac17e644960de8588dp@chr11:61474548..61474552, +
2.84e-21FFCP PHASE1:Mm9::chr13:41520525..41520563,-#_566995d922d9f5d2cd74c5748f9c2908p@chr13:41520525..41520563, -
2.84e-21FFCP PHASE2:Mm9::chr13:41520525..41520563,-#_566995d922d9f5d2cd74c5748f9c2908p@chr13:41520525..41520563, -
3.33e-21FFCP PHASE1:Hg19::chr16:87872769..87872797,-#_721d53e5b54853e7f677706fa8a0d618p@chr16:87872769..87872797, -
3.33e-21FFCP PHASE2:Hg19::chr16:87872769..87872797,-#_721d53e5b54853e7f677706fa8a0d618p@chr16:87872769..87872797, -
3.48e-21FFCP PHASE2:Mm9::chr16:34807285..34807303,+#_48feeaf441af50f13761c72b3b4022ebp@chr16:34807285..34807303, +
3.48e-21FFCP PHASE1:Mm9::chr16:34807285..34807303,+#_48feeaf441af50f13761c72b3b4022ebp@chr16:34807285..34807303, +
3.59e-21FFCP PHASE1:Hg19::chr7:101917482..101917507,+#_76c910a108ac234fe650c60d34da1626p6@CUX1
3.59e-21FFCP PHASE2:Hg19::chr7:101917482..101917507,+#_76c910a108ac234fe650c60d34da1626p6@CUX1
5.73e-21FFCP PHASE1:Hg19::chr9:140119618..140119635,+#_1535f834338ebf79079d399b6ca567b1p1@C9orf169
5.73e-21FFCP PHASE2:Hg19::chr9:140119618..140119635,+#_1535f834338ebf79079d399b6ca567b1p1@C9orf169
7.22e-21FFCP PHASE2:Hg19::chr14:64579753..64579770,+#_0bccdb975072e8173214ec6e55c3dc8cp@chr14:64579753..64579770, +
7.22e-21FFCP PHASE1:Hg19::chr14:64579753..64579770,+#_0bccdb975072e8173214ec6e55c3dc8cp@chr14:64579753..64579770, +
9.91e-21FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_b58e3daf533a0e448943c2819bba4403p@chr16:68260798..68260800, -
9.91e-21FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_b58e3daf533a0e448943c2819bba4403p@chr16:68260798..68260800, -
1.27e-20FFCP PHASE2:Hg19::chr1:100111394..100111419,+#_ad9a90a8a9c189423a7a81be375b5d26p6@PALMD
1.27e-20FFCP PHASE1:Hg19::chr1:100111394..100111419,+#_ad9a90a8a9c189423a7a81be375b5d26p6@PALMD
1.28e-20FFCP PHASE2:Hg19::chr2:211540478..211540490,+#_376ab95fd74e85ce395f0d7326b77affp@chr2:211540478..211540490, +
1.28e-20FFCP PHASE1:Hg19::chr2:211540478..211540490,+#_376ab95fd74e85ce395f0d7326b77affp@chr2:211540478..211540490, +
1.59e-20FFCP PHASE2:Hg19::chr2:211469821..211469857,+#_025211f61a562c717237bd857485b69bp8@CPS1
1.59e-20FFCP PHASE1:Hg19::chr2:211469821..211469857,+#_025211f61a562c717237bd857485b69bp8@CPS1
1.99e-20FFCP PHASE1:Hg19::chr7:158766986..158767004,+#_4b05bc84f3f5d0701fd9eb8958670912p@chr7:158766986..158767004, +
1.99e-20FFCP PHASE2:Hg19::chr7:158766986..158767004,+#_4b05bc84f3f5d0701fd9eb8958670912p@chr7:158766986..158767004, +
2.04e-20FFCP PHASE1:Hg19::chr21:44817397..44817432,-#_440c670e65b3172c091a3fd909c7384dp@chr21:44817397..44817432, -
2.04e-20FFCP PHASE2:Hg19::chr21:44817397..44817432,-#_440c670e65b3172c091a3fd909c7384dp@chr21:44817397..44817432, -
2.23e-20FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_458e0e419e934cf77e880e2239d4164ap1@PTK6
2.23e-20FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_458e0e419e934cf77e880e2239d4164ap1@PTK6
2.89e-20FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_985f84d33bfadadadabcc932ae88c1a2p1@AK297894
2.89e-20FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_985f84d33bfadadadabcc932ae88c1a2p1@AK297894
2.89e-20FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_985f84d33bfadadadabcc932ae88c1a2p1@ENST00000441266
2.89e-20FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_985f84d33bfadadadabcc932ae88c1a2p7@uc003ysb.2
2.89e-20FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_985f84d33bfadadadabcc932ae88c1a2p@chr2:53732986..53732989, -
2.89e-20FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_985f84d33bfadadadabcc932ae88c1a2p2@AK297894
2.89e-20FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87874486..87874492, -
2.89e-20FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87874486..87874492, -
2.89e-20FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_985f84d33bfadadadabcc932ae88c1a2p@chr2:53732986..53732989, -
2.89e-20FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87869864..87869878, +
2.89e-20FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_985f84d33bfadadadabcc932ae88c1a2p@chr17:79098633..79098647, -
2.89e-20FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87869864..87869878, +
2.89e-20FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_985f84d33bfadadadabcc932ae88c1a2p7@uc003ysb.2
2.89e-20FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_985f84d33bfadadadabcc932ae88c1a2p9@ALPP
2.89e-20FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_985f84d33bfadadadabcc932ae88c1a2p6@ALPP
2.89e-20FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_985f84d33bfadadadabcc932ae88c1a2p6@ALPP
2.89e-20FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_985f84d33bfadadadabcc932ae88c1a2p2@AK297894
2.89e-20FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_985f84d33bfadadadabcc932ae88c1a2p@chr17:79098633..79098647, -
2.89e-20FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_985f84d33bfadadadabcc932ae88c1a2p9@ALPP
2.89e-20FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_985f84d33bfadadadabcc932ae88c1a2p1@ENST00000441266