Personal tools

UBERON:0001041

From FANTOM5_SSTAR

Revision as of 08:15, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:foregut
Namespace:FANTOM
Definition:"Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
Xrefs:
links:

AAO:0011042
BILA:0000085
BTO:0000507
EHDAA2:0000557
EHDAA:520
EMAPA:16548
FBbt:00005379
FMA:45616
[ Gray27.png Gray27.png]
[ 200px-Gray27.png 200px-Gray27.png]
MA:0001526
ncithesaurus:Foregut
SCTID:361409009
TGMA:0001014
VHOG:0000285

XAO:0000232
Synonyms: "praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut]
Comments:Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
Alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
Subset: developmental_classification
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)



Children

develops from:UBERON:0000115 (lung epithelium),UBERON:0001043 (esophagus),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004908 (upper digestive tract),UBERON:0005597 (lung primordium)
part of:UBERON:0000945 (stomach),UBERON:0003258 (endoderm of foregut),UBERON:0003294 (gland of foregut),UBERON:0009143 (esophageal region),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015833 (foregut epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001041 (foregut), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.14e-28FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_689a0fb91bc5a1df5c43e636b781aa70p1@FOXA1
1.14e-28FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_689a0fb91bc5a1df5c43e636b781aa70p1@FOXA1
9.69e-28FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_db9e5ad693d5ad724ef4507ce3d0c4cbp2@ALDH3A1
9.69e-28FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_db9e5ad693d5ad724ef4507ce3d0c4cbp2@ALDH3A1
6.01e-27FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_b84b2db4827b9c517e0ac6cb306715a8p1@UGT1A7
6.01e-27FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_b84b2db4827b9c517e0ac6cb306715a8p1@UGT1A7
9.26e-27FFCP PHASE1:Hg19::chr8:128231080..128231222,-#_bc5d717a55b126cd43d727b65df52cafp1@ENST00000500112, p1@uc003ysa.1
9.26e-27FFCP PHASE2:Hg19::chr8:128231080..128231222,-#_bc5d717a55b126cd43d727b65df52cafp1@ENST00000500112, p1@uc003ysa.1
3.81e-26FFCP PHASE2:Hg19::chr17:19651654..19651665,-#_ebd1c7c2b52384761102e22ff9163545p3@ALDH3A1
3.81e-26FFCP PHASE1:Hg19::chr17:19651654..19651665,-#_ebd1c7c2b52384761102e22ff9163545p3@ALDH3A1
6.73e-26FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_0187bd4fb18cdc517938cb41f113d0d0p1@ESRP2
6.73e-26FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_0187bd4fb18cdc517938cb41f113d0d0p1@ESRP2
3.18e-25FFCP PHASE2:Hg19::chr6:64281946..64281977,+#_178fb5e5855507c9a72949ecdc23fca7p12@PTP4A1
3.18e-25FFCP PHASE1:Hg19::chr6:64281946..64281977,+#_178fb5e5855507c9a72949ecdc23fca7p12@PTP4A1
1.33e-24FFCP PHASE1:Hg19::chr2:238592039..238592054,+#_8684fb1c2c0f56c9583fa1bd87997329p4@LRRFIP1
1.33e-24FFCP PHASE2:Hg19::chr2:238592039..238592054,+#_8684fb1c2c0f56c9583fa1bd87997329p4@LRRFIP1
2.5e-24FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_64ae6044a87507c1ce54a398eb3955c7p1@MYO5B
2.5e-24FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_64ae6044a87507c1ce54a398eb3955c7p1@MYO5B
6.79e-24FFCP PHASE1:Hg19::chr4:41361616..41361632,+#_5e9bf0a8ecd2102ff273b2ef1adc19acp8@LIMCH1
6.79e-24FFCP PHASE2:Hg19::chr4:41361616..41361632,+#_5e9bf0a8ecd2102ff273b2ef1adc19acp8@LIMCH1
8.3e-24FFCP PHASE1:Hg19::chr9:124499430..124499462,+#_ca75ed94f9bbccb1e3aacc939f3d1036p@chr9:124499430..124499462, +
8.3e-24FFCP PHASE2:Hg19::chr9:124499430..124499462,+#_ca75ed94f9bbccb1e3aacc939f3d1036p@chr9:124499430..124499462, +
1.18e-23FFCP PHASE1:Hg19::chr4:41361634..41361643,+#_1fc3978728b0660a32738c4481394d4cp19@LIMCH1
1.18e-23FFCP PHASE2:Hg19::chr4:41361634..41361643,+#_1fc3978728b0660a32738c4481394d4cp19@LIMCH1
3.83e-23FFCP PHASE2:Hg19::chr2:211543115..211543126,+#_29adadf836470ec0c04f19b89bff3953p@chr2:211543115..211543126, +
3.83e-23FFCP PHASE1:Hg19::chr2:211543115..211543126,+#_29adadf836470ec0c04f19b89bff3953p@chr2:211543115..211543126, +
5.47e-23FFCP PHASE1:Hg19::chr4:41361774..41361783,+#_28383f0966746aa3fe21641967a7fb39p26@LIMCH1
5.47e-23FFCP PHASE2:Hg19::chr4:41361774..41361783,+#_28383f0966746aa3fe21641967a7fb39p26@LIMCH1
5.63e-23FFCP PHASE2:Mm9::chr16:34807407..34807430,+#_62bb155efe3d664c74c3ffbb95ff0d63p@chr16:34807407..34807430, +
5.63e-23FFCP PHASE1:Mm9::chr16:34807407..34807430,+#_62bb155efe3d664c74c3ffbb95ff0d63p@chr16:34807407..34807430, +
1.03e-22FFCP PHASE2:Hg19::chr1:207263643..207263662,+#_1dc8c57ff1796534f8ccb23b2b3b0e65p@chr1:207263643..207263662, +
1.03e-22FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_1dc8c57ff1796534f8ccb23b2b3b0e65p3@CLDN7
1.03e-22FFCP PHASE1:Hg19::chr1:207263643..207263662,+#_1dc8c57ff1796534f8ccb23b2b3b0e65p@chr1:207263643..207263662, +
1.03e-22FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_1dc8c57ff1796534f8ccb23b2b3b0e65p3@CLDN7
1.37e-22FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_0f4781060b0aac8774d73b2f657164f9p1@TMEM184A
1.37e-22FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_0f4781060b0aac8774d73b2f657164f9p1@TMEM184A
1.75e-22FFCP PHASE1:Hg19::chr6:64282212..64282247,+#_54b8a8882684a0ab1b8733afbbab9610p19@PTP4A1
1.75e-22FFCP PHASE2:Hg19::chr6:64282212..64282247,+#_54b8a8882684a0ab1b8733afbbab9610p19@PTP4A1
2.01e-22FFCP PHASE1:Mm9::chr2:91034924..91034946,-#_cd3442e5463e864aebab3d4129b66262p2@Nr1h3
2.01e-22FFCP PHASE2:Mm9::chr2:91034924..91034946,-#_cd3442e5463e864aebab3d4129b66262p2@Nr1h3
2.02e-22FFCP PHASE2:Hg19::chr3:161318448..161318456,+#_2414134c6c44a83e6b35dc676bd68cdap@chr3:161318448..161318456, +
2.02e-22FFCP PHASE1:Hg19::chr3:161318448..161318456,+#_2414134c6c44a83e6b35dc676bd68cdap@chr3:161318448..161318456, +
2.04e-22FFCP PHASE2:Hg19::chr2:211466992..211467008,+#_1d6a00d1e6b29bec23bd441eb9a51d2bp@chr2:211466992..211467008, +
2.04e-22FFCP PHASE1:Hg19::chr2:211466992..211467008,+#_1d6a00d1e6b29bec23bd441eb9a51d2bp@chr2:211466992..211467008, +
2.58e-22FFCP PHASE2:Hg19::chr2:226378208..226378213,+#_2715ef31bf1fd7bbdb0eaf743a4f511ep@chr2:226378208..226378213, +
2.58e-22FFCP PHASE1:Hg19::chr2:226378208..226378213,+#_2715ef31bf1fd7bbdb0eaf743a4f511ep@chr2:226378208..226378213, +
9.27e-22FFCP PHASE2:Mm9::chr1:173697275..173697301,+#_820e6386b8a2d8c32818320549304bf8p1@Slamf1
9.27e-22FFCP PHASE1:Mm9::chr1:173697275..173697301,+#_820e6386b8a2d8c32818320549304bf8p1@Slamf1
1.27e-21FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_69921bb903a14d1da12cc926bee0f981p2@LMO7
1.27e-21FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_69921bb903a14d1da12cc926bee0f981p2@LMO7
1.3e-21FFCP PHASE2:Hg19::chr2:234296792..234296806,+#_31c63f5141925e7944d275d221f81841p13@DGKD
1.3e-21FFCP PHASE1:Hg19::chr2:234296792..234296806,+#_31c63f5141925e7944d275d221f81841p13@DGKD
1.56e-21FFCP PHASE1:Mm9::chr11:61474548..61474552,+#_be42603dd8e19dac17e644960de8588dp@chr11:61474548..61474552, +
1.56e-21FFCP PHASE2:Mm9::chr11:61474548..61474552,+#_be42603dd8e19dac17e644960de8588dp@chr11:61474548..61474552, +
2.84e-21FFCP PHASE1:Mm9::chr13:41520525..41520563,-#_566995d922d9f5d2cd74c5748f9c2908p@chr13:41520525..41520563, -
2.84e-21FFCP PHASE2:Mm9::chr13:41520525..41520563,-#_566995d922d9f5d2cd74c5748f9c2908p@chr13:41520525..41520563, -
3.33e-21FFCP PHASE2:Hg19::chr16:87872769..87872797,-#_721d53e5b54853e7f677706fa8a0d618p@chr16:87872769..87872797, -
3.33e-21FFCP PHASE1:Hg19::chr16:87872769..87872797,-#_721d53e5b54853e7f677706fa8a0d618p@chr16:87872769..87872797, -
3.48e-21FFCP PHASE1:Mm9::chr16:34807285..34807303,+#_48feeaf441af50f13761c72b3b4022ebp@chr16:34807285..34807303, +
3.48e-21FFCP PHASE2:Mm9::chr16:34807285..34807303,+#_48feeaf441af50f13761c72b3b4022ebp@chr16:34807285..34807303, +
3.59e-21FFCP PHASE1:Hg19::chr7:101917482..101917507,+#_76c910a108ac234fe650c60d34da1626p6@CUX1
3.59e-21FFCP PHASE2:Hg19::chr7:101917482..101917507,+#_76c910a108ac234fe650c60d34da1626p6@CUX1
5.73e-21FFCP PHASE1:Hg19::chr9:140119618..140119635,+#_1535f834338ebf79079d399b6ca567b1p1@C9orf169
5.73e-21FFCP PHASE2:Hg19::chr9:140119618..140119635,+#_1535f834338ebf79079d399b6ca567b1p1@C9orf169
7.22e-21FFCP PHASE2:Hg19::chr14:64579753..64579770,+#_0bccdb975072e8173214ec6e55c3dc8cp@chr14:64579753..64579770, +
7.22e-21FFCP PHASE1:Hg19::chr14:64579753..64579770,+#_0bccdb975072e8173214ec6e55c3dc8cp@chr14:64579753..64579770, +
9.91e-21FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_b58e3daf533a0e448943c2819bba4403p@chr16:68260798..68260800, -
9.91e-21FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_b58e3daf533a0e448943c2819bba4403p@chr16:68260798..68260800, -
1.27e-20FFCP PHASE2:Hg19::chr1:100111394..100111419,+#_ad9a90a8a9c189423a7a81be375b5d26p6@PALMD
1.27e-20FFCP PHASE1:Hg19::chr1:100111394..100111419,+#_ad9a90a8a9c189423a7a81be375b5d26p6@PALMD
1.28e-20FFCP PHASE1:Hg19::chr2:211540478..211540490,+#_376ab95fd74e85ce395f0d7326b77affp@chr2:211540478..211540490, +
1.28e-20FFCP PHASE2:Hg19::chr2:211540478..211540490,+#_376ab95fd74e85ce395f0d7326b77affp@chr2:211540478..211540490, +
1.59e-20FFCP PHASE2:Hg19::chr2:211469821..211469857,+#_025211f61a562c717237bd857485b69bp8@CPS1
1.59e-20FFCP PHASE1:Hg19::chr2:211469821..211469857,+#_025211f61a562c717237bd857485b69bp8@CPS1
1.99e-20FFCP PHASE1:Hg19::chr7:158766986..158767004,+#_4b05bc84f3f5d0701fd9eb8958670912p@chr7:158766986..158767004, +
1.99e-20FFCP PHASE2:Hg19::chr7:158766986..158767004,+#_4b05bc84f3f5d0701fd9eb8958670912p@chr7:158766986..158767004, +
2.04e-20FFCP PHASE2:Hg19::chr21:44817397..44817432,-#_440c670e65b3172c091a3fd909c7384dp@chr21:44817397..44817432, -
2.04e-20FFCP PHASE1:Hg19::chr21:44817397..44817432,-#_440c670e65b3172c091a3fd909c7384dp@chr21:44817397..44817432, -
2.23e-20FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_458e0e419e934cf77e880e2239d4164ap1@PTK6
2.23e-20FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_458e0e419e934cf77e880e2239d4164ap1@PTK6
2.89e-20FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_985f84d33bfadadadabcc932ae88c1a2p7@uc003ysb.2
2.89e-20FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87869864..87869878, +
2.89e-20FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87874486..87874492, -
2.89e-20FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_985f84d33bfadadadabcc932ae88c1a2p@chr17:79098633..79098647, -
2.89e-20FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_985f84d33bfadadadabcc932ae88c1a2p1@AK297894
2.89e-20FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_985f84d33bfadadadabcc932ae88c1a2p2@AK297894
2.89e-20FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_985f84d33bfadadadabcc932ae88c1a2p9@ALPP
2.89e-20FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_985f84d33bfadadadabcc932ae88c1a2p1@ENST00000441266
2.89e-20FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_985f84d33bfadadadabcc932ae88c1a2p6@ALPP
2.89e-20FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_985f84d33bfadadadabcc932ae88c1a2p@chr2:53732986..53732989, -
2.89e-20FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_985f84d33bfadadadabcc932ae88c1a2p7@uc003ysb.2
2.89e-20FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87869864..87869878, +
2.89e-20FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_985f84d33bfadadadabcc932ae88c1a2p@chr16:87874486..87874492, -
2.89e-20FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_985f84d33bfadadadabcc932ae88c1a2p@chr17:79098633..79098647, -
2.89e-20FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_985f84d33bfadadadabcc932ae88c1a2p1@AK297894
2.89e-20FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_985f84d33bfadadadabcc932ae88c1a2p2@AK297894
2.89e-20FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_985f84d33bfadadadabcc932ae88c1a2p9@ALPP
2.89e-20FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_985f84d33bfadadadabcc932ae88c1a2p1@ENST00000441266
2.89e-20FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_985f84d33bfadadadabcc932ae88c1a2p6@ALPP
2.89e-20FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_985f84d33bfadadadabcc932ae88c1a2p@chr2:53732986..53732989, -