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UBERON:0001434

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Name:skeletal system
Namespace:FANTOM
Definition:"Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA]
Xrefs:
links:

AAO:0000566
BTO:0001486
EFO:0000806
EHDAA2:0003168
FMA:23881
MA:0000018
ncithesaurus:Skeletal_System
OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
TAO:0000434
VHOG:0001254
VSAO:0000027
XAO:0003060

ZFA:0000434
Synonyms: "set of all bones and joints" NARROW SENSU []
"skeleton system" EXACT []
"Skelettsystem" RELATED [BTO:0001486]
Comments:Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates
Alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0001474(bone element),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)
part_of:UBERON:0002204(musculoskeletal system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system)
part of:UBERON:0000075 (subdivision of skeletal system),UBERON:0001474 (bone element),UBERON:0004288 (skeleton),UBERON:0004765 (skeletal element),UBERON:0004770 (articular system),UBERON:0008846 (skeletal ligament)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001434 (skeletal system), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.22e-88FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_b8fb1dc3c69368b3650732dc0aecdc7ap@chr1:161187824..161187847, +
5.22e-88FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_b8fb1dc3c69368b3650732dc0aecdc7ap@chr1:161187824..161187847, +
1.6e-84FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_40f568ef6a98d4da4b4cb418dc3115dfp@chr1:161188661..161188679, +
1.6e-84FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_40f568ef6a98d4da4b4cb418dc3115dfp@chr1:161188661..161188679, +
3.06e-84FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_bda333b0b7fb872c9ebbb0a7b48c6d1cp@chr16:50313426..50313459, +
3.06e-84FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_bda333b0b7fb872c9ebbb0a7b48c6d1cp@chr16:50313426..50313459, +
2.31e-83FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_259f6bfe43b31a3e2a2f77a5e9bc22b6p@chr7:77050554..77050601, +
2.31e-83FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_259f6bfe43b31a3e2a2f77a5e9bc22b6p@chr7:77050554..77050601, +
7.38e-83FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_5d215e08e77c728ac215157ea88017edp7@EMILIN2
7.38e-83FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_5d215e08e77c728ac215157ea88017edp7@EMILIN2
3.86e-82FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_a93cfd5d4cd17804ed28c681a231aebap@chr1:161188746..161188758, +
3.86e-82FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_a93cfd5d4cd17804ed28c681a231aebap@chr1:161188746..161188758, +
3.87e-82FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_aca3cc4a8525ee70a1fe49da68df0dfep@chr17:7482481..7482508, -
3.87e-82FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_aca3cc4a8525ee70a1fe49da68df0dfep@chr17:7482481..7482508, -
3.14e-81FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_34939878aaf05426d639c7f432e4f00fp5@IFI30
3.14e-81FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_34939878aaf05426d639c7f432e4f00fp5@IFI30
1.7e-79FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_0bc340a150597692010c3da40d81e99ap@chr4:3387239..3387324, -
1.7e-79FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_0bc340a150597692010c3da40d81e99ap@chr4:3387239..3387324, -
2.9e-79FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_617300c784aeedbec9f776477c70e711+, p@chr7:2832730..2832791
2.9e-79FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_617300c784aeedbec9f776477c70e711p@chr7:2832730..2832791, +
5.36e-79FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_bc3e474ce90ba89ac46a2c41981af839p15@MGAT1
5.36e-79FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_bc3e474ce90ba89ac46a2c41981af839p15@MGAT1
3.48e-78FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_d598be908f9f657841ad83ca22a72db3p8@CHI3L2
3.48e-78FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_d598be908f9f657841ad83ca22a72db3p8@CHI3L2
3.72e-78FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_ae71ebd8cc905eb042b783f55eb2cc74p7@IFI30
3.72e-78FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_ae71ebd8cc905eb042b783f55eb2cc74p7@IFI30
5.03e-78FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_19d12ebc48d08b6207caced3eb3e5d4fp1@AK126179
5.03e-78FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_19d12ebc48d08b6207caced3eb3e5d4fp1@AK126179
2.92e-77FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_0a67019169a7a7f4345806ccc5dbc935p@chr2:145429606..145429658, +
2.92e-77FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_0a67019169a7a7f4345806ccc5dbc935p@chr2:145429606..145429658, +
1.44e-76FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_f574d8e021e7f7acf47c71a399fb841cp2@CD300C
1.44e-76FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_f574d8e021e7f7acf47c71a399fb841cp2@CD300C
1.96e-76FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_1b952f09e9ff88ac58fa7f5f6daa9f73p@chr19:18286116..18286156, +
1.96e-76FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_1b952f09e9ff88ac58fa7f5f6daa9f73p@chr19:18286116..18286156, +
5.23e-76FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_e26bc96e31cb890924e2d7bca655f033p1@CYP1B1-AS1
5.23e-76FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_e26bc96e31cb890924e2d7bca655f033p1@CYP1B1-AS1
1.18e-75FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_b259dcc4857287c72e20e465059a896dp@chr15:65174546..65174583, -
1.18e-75FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_b259dcc4857287c72e20e465059a896dp@chr15:65174546..65174583, -
1.51e-75FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_6f48ac63d86c6a3f1cb35d319a538d30p7@FNIP2
1.51e-75FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_6f48ac63d86c6a3f1cb35d319a538d30p7@FNIP2
2.32e-75FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_ff7528f93dbb9d38ac3844f4439947cbp7@RNF13
2.32e-75FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_ff7528f93dbb9d38ac3844f4439947cbp7@RNF13
3.02e-75FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_73245971218a4642facdf635e67460a5p@chr19:52299474..52299504, -
3.02e-75FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_73245971218a4642facdf635e67460a5p@chr19:52299474..52299504, -
3.37e-75FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_dc9a8f2e7f44fe01bbe3943ff3e2c35ap@chr4:185314125..185314143, -
3.37e-75FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_dc9a8f2e7f44fe01bbe3943ff3e2c35ap@chr4:185314125..185314143, -
3.49e-75FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_a4ee29bf08abc170f72213d0cd871f42p1@ENST00000425320
3.49e-75FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_a4ee29bf08abc170f72213d0cd871f42p1@ENST00000425320
6.13e-75FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_07f01debd643cdfdf967c8595772b9a1p@chr19:18288064..18288080, +
6.13e-75FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_07f01debd643cdfdf967c8595772b9a1p@chr19:18288064..18288080, +
2.26e-74FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_4f1e54e6f8eed162d093a975e4dd2a31p@chr10:73648356..73648408, -
2.26e-74FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_4f1e54e6f8eed162d093a975e4dd2a31p@chr10:73648356..73648408, -
2.87e-74FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_470933509c1b77a3af91fa270dc2ff67p@chr1:161188686..161188721, +
2.87e-74FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_470933509c1b77a3af91fa270dc2ff67+, p@chr1:161188686..161188721
3.62e-74FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_5a623635a44db9539ee3adb3b61af175p@chr4:185314151..185314178, -
3.62e-74FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_5a623635a44db9539ee3adb3b61af175p@chr4:185314151..185314178, -
4.15e-74FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_b9ec632bd2dc2ccdf28bac896c05f791p@chr2:119726719..119726744, +
4.15e-74FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_b9ec632bd2dc2ccdf28bac896c05f791p@chr2:119726719..119726744, +
5.35e-74FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_eac542b7495c58d738e0aa4d5b1a2417p@chr4:185314188..185314207, -
5.35e-74FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_eac542b7495c58d738e0aa4d5b1a2417p@chr4:185314188..185314207, -
1.29e-73FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_54b98a33d474fb722ea5285782f2f5ffp2@ZEB2-AS1
1.29e-73FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_54b98a33d474fb722ea5285782f2f5ffp2@ZEB2-AS1
1.68e-73FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_7be6b321255c45fe5a68aef13c4847a1p@chrX:37664331..37664352, +
1.68e-73FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_7be6b321255c45fe5a68aef13c4847a1p@chrX:37664331..37664352, +
1.8e-73FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_ff341745ca5cbd8f3dc7e46ae43e56d8p4@RNF115
1.8e-73FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_ff341745ca5cbd8f3dc7e46ae43e56d8p4@RNF115
1.87e-73FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_855c0a9bb3b9531709fc4c525a102bbdp@chr8:116588888..116588904, +
1.87e-73FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_855c0a9bb3b9531709fc4c525a102bbdp@chr8:116588888..116588904, +
2.59e-73FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_d2560a29ff0e02991537e3913be85da5p@chr2:129283966..129283970, +
2.59e-73FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_d2560a29ff0e02991537e3913be85da5p@chr2:129283966..129283970, +
3.0e-73FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_0bc4faf23774ad57b40b4c4fa21ff151p@chrX:153286067..153286101, -
3.0e-73FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_0bc4faf23774ad57b40b4c4fa21ff151p@chrX:153286067..153286101, -
3.74e-73FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_a38e472aa970ce0248f70f4ab1db493bp5@CU676849, p5@CU689079
3.74e-73FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_a38e472aa970ce0248f70f4ab1db493bp5@CU676849, p5@CU689079
3.98e-73FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_83a92db549413285f9778b1f281745ebp@chr1:26602990..26603008, +
3.98e-73FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_83a92db549413285f9778b1f281745ebp@chr1:26602990..26603008, +
4.47e-73FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_c60e3753c2ec894c19888f14c33256f3p@chr1:108593061..108593077, +
4.47e-73FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_c60e3753c2ec894c19888f14c33256f3p@chr1:108593061..108593077, +
5.41e-73FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_4cc517d04d553c14feea0420f52cb2a8p8@CTSS
5.41e-73FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_4cc517d04d553c14feea0420f52cb2a8p8@CTSS
1.14e-72FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_554457fb0bef3cc72eeab9b429f35834p@chr1:161188826..161188842, +
1.14e-72FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_554457fb0bef3cc72eeab9b429f35834p@chr1:161188826..161188842, +
3.78e-72FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_dbfed40f66267c3a7a2e065b22572e4dp@chr20:1517991..1518011, -
3.78e-72FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_dbfed40f66267c3a7a2e065b22572e4dp@chr20:1517991..1518011, -
5.08e-72FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_34906eca045f8a5e168bf54e036318d3p@chr19:18285955..18285972, +
5.08e-72FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_34906eca045f8a5e168bf54e036318d3p@chr19:18285955..18285972, +
1.2e-71FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_59987aebe1e389a47fdd1c7a910aa25ap4@EIF2AK1
1.2e-71FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_59987aebe1e389a47fdd1c7a910aa25ap4@EIF2AK1
1.4e-71FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_46cadc8e285ae63e16eaba28d5bd8e46p6@IFI30
1.4e-71FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_46cadc8e285ae63e16eaba28d5bd8e46p6@IFI30
1.48e-71FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_95aabc22399274364cbfb86146a7b49fp4@ST18
1.48e-71FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_95aabc22399274364cbfb86146a7b49fp4@ST18
1.68e-71FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_52a1f993252bbd517847039839c49b86p12@MGAT1
1.68e-71FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_52a1f993252bbd517847039839c49b86p12@MGAT1
1.69e-71FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_bc93acf21881b6837078a2c25c74a48fp@chr19:51625924..51625942, +
1.69e-71FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_bc93acf21881b6837078a2c25c74a48fp@chr19:51625924..51625942, +
2.0e-71FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_efa5568338d71098ccddca5916a2292cp@chr17:7483714..7483726, +
2.0e-71FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_efa5568338d71098ccddca5916a2292cp@chr17:7483714..7483726, +
2.47e-71FFCP PHASE1:Hg19::chr4:185266972..185267007,+#_a4e85fb73ca77f3485efa4eb871d275ep@chr4:185266972..185267007, +
2.47e-71FFCP PHASE2:Hg19::chr4:185266972..185267007,+#_a4e85fb73ca77f3485efa4eb871d275ep@chr4:185266972..185267007, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "System that provides physical support to the organism.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.