UBERON:0001560: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_45733-MA_0000589 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001560 | |||
|is_a=UBERON:0000064 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=neck of organ | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="organ neck" EXACT [] | ||
|union_of= | |||
|xref=FMA:45733 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | neck of organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "organ neck" EXACT [] | ||
| Alt_id: | UBERON:FMA_45733-MA_0000589 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0000002 (uterine cervix) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10530-107F8
- 10552-107I3 (cervical cancer cell line:D98-AH2)
- 10553-107I4 (cervical cancer cell line:ME-180)
- 10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)
- 10598-108E4
- 10655-109B7
- 10754-110D7
- 10755-110D8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001560 (neck of organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.22e-44 | FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93f | p5@TDRD9 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93f | p5@TDRD9 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:160356414..160356417,-#_c0293cf5db285ab44302650b127d8d1c | p@chr5:160356414..160356417, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:9059377..9059382,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:9059377..9059382, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:18689637..18689645,+#_c0293cf5db285ab44302650b127d8d1c | p28@CACNB2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152084870..152084873,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084870..152084873, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:7184828..7184838,-#_c0293cf5db285ab44302650b127d8d1c | p@chr19:7184828..7184838, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:22001308..22001310,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:22001308..22001310, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:47588743..47588750,-#_c0293cf5db285ab44302650b127d8d1c | p9@C21orf56 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:57928958..57928964,-#_c0293cf5db285ab44302650b127d8d1c | p@chr7:57928958..57928964, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:2361545..2361557,+#_c0293cf5db285ab44302650b127d8d1c | p1@TGM6 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918470..21918480,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918470..21918480, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:153371709..153371712,-#_c0293cf5db285ab44302650b127d8d1c | p@chr1:153371709..153371712, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:79225428..79225433,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:79225428..79225433, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:55205086..55205090,-#_c0293cf5db285ab44302650b127d8d1c | p@chr3:55205086..55205090, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:70826186..70826193,-#_c0293cf5db285ab44302650b127d8d1c | p4@ENST00000413943 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:2439293..2439304,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2439293..2439304, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:27892902..27892907,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892902..27892907, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:80963666..80963669,-#_c0293cf5db285ab44302650b127d8d1c | p37@TPD52 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:99550654..99550658,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:99550654..99550658, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:74350663..74350688,-#_c0293cf5db285ab44302650b127d8d1c | p@chr18:74350663..74350688, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:62030063..62030071,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62030063..62030071, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:4501551..4501558,-#_c0293cf5db285ab44302650b127d8d1c | p@chr4:4501551..4501558, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:23465559..23465575,-#_c0293cf5db285ab44302650b127d8d1c | p@chr14:23465559..23465575, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152084876..152084885,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084876..152084885, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:49467678..49467693,+#_c0293cf5db285ab44302650b127d8d1c | p2@GLYATL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:181432833..181432842,+#_c0293cf5db285ab44302650b127d8d1c | p@chr3:181432833..181432842, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:163124750..163124764,-#_c0293cf5db285ab44302650b127d8d1c | p@chr4:163124750..163124764, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:43726566..43726571,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:43726566..43726571, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41485201..41485208,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485201..41485208, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41484957..41484961,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41484957..41484961, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:127258190..127258201,-#_c0293cf5db285ab44302650b127d8d1c | p2@PAX4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:131117129..131117135,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117129..131117135, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:22001308..22001310,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:22001308..22001310, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:47588743..47588750,-#_c0293cf5db285ab44302650b127d8d1c | p9@C21orf56 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121058540..121058543,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121058540..121058543, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:16838056..16838070,+#_c0293cf5db285ab44302650b127d8d1c | p@chr19:16838056..16838070, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:32314322..32314327,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:32314322..32314327, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:153371709..153371712,-#_c0293cf5db285ab44302650b127d8d1c | p@chr1:153371709..153371712, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:55205086..55205090,-#_c0293cf5db285ab44302650b127d8d1c | p@chr3:55205086..55205090, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918384..21918387,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918384..21918387, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:27892902..27892907,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892902..27892907, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:182548440..182548448,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:182548440..182548448, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:2436019..2436030,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436019..2436030, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr14:23465559..23465575,-#_c0293cf5db285ab44302650b127d8d1c | p@chr14:23465559..23465575, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:21918470..21918480,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918470..21918480, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121056549..121056554,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121056549..121056554, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:185016843..185016846,+#_c0293cf5db285ab44302650b127d8d1c | p@chr3:185016843..185016846, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2436541..2436561,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436541..2436561, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:49467718..49467724,+#_c0293cf5db285ab44302650b127d8d1c | p4@GLYATL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:43727212..43727217,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:43727212..43727217, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41485217..41485222,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485217..41485222, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:43726566..43726571,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:43726566..43726571, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:39290499..39290502,-#_c0293cf5db285ab44302650b127d8d1c | p8@KCNK16 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41484957..41484961,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41484957..41484961, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:127258190..127258201,-#_c0293cf5db285ab44302650b127d8d1c | p2@PAX4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152084876..152084885,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084876..152084885, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:39150341..39150346,-#_c0293cf5db285ab44302650b127d8d1c | p2@KRTAP3-3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:181432833..181432842,+#_c0293cf5db285ab44302650b127d8d1c | p@chr3:181432833..181432842, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:14849447..14849450,-#_c0293cf5db285ab44302650b127d8d1c | p7@GUCY2C |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:207193762..207193766,+#_c0293cf5db285ab44302650b127d8d1c | p@chr1:207193762..207193766, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:16838056..16838070,+#_c0293cf5db285ab44302650b127d8d1c | p@chr19:16838056..16838070, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:22449463..22449467,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:22449463..22449467, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:32314322..32314327,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:32314322..32314327, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121054330..121054333,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121054330..121054333, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:27892922..27892925,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892922..27892925, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:79742692..79742706,+#_c0293cf5db285ab44302650b127d8d1c | p@chr11:79742692..79742706, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41508626..41508633,+#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41508626..41508633, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:160356414..160356417,-#_c0293cf5db285ab44302650b127d8d1c | p@chr5:160356414..160356417, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:62030084..62030091,-#_c0293cf5db285ab44302650b127d8d1c | p@chr10:62030084..62030091, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:20705180..20705181,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:20705180..20705181, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:131117116..131117123,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117116..131117123, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:21918384..21918387,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918384..21918387, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:185016843..185016846,+#_c0293cf5db285ab44302650b127d8d1c | p@chr3:185016843..185016846, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152084890..152084896,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:152084890..152084896, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:49467718..49467724,+#_c0293cf5db285ab44302650b127d8d1c | p4@GLYATL3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:43727212..43727217,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:43727212..43727217, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:49467576..49467583,+#_c0293cf5db285ab44302650b127d8d1c | p5@GLYATL3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41485217..41485222,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485217..41485222, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:148401920..148401930,+#_c0293cf5db285ab44302650b127d8d1c | p7@EDNRA |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:78152310..78152314,+#_c0293cf5db285ab44302650b127d8d1c | p10@CARD14 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:41485005..41485017,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41485005..41485017, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:127260123..127260165,+#_c0293cf5db285ab44302650b127d8d1c | p@chr7:127260123..127260165, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:933356..933367,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:933356..933367, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr22:32555214..32555221,-#_c0293cf5db285ab44302650b127d8d1c | p2@C22orf42 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:39290499..39290502,-#_c0293cf5db285ab44302650b127d8d1c | p8@KCNK16 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:131117147..131117158,-#_c0293cf5db285ab44302650b127d8d1c | p@chr12:131117147..131117158, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:39150341..39150346,-#_c0293cf5db285ab44302650b127d8d1c | p2@KRTAP3-3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:121062548..121062551,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121062548..121062551, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:32314379..32314387,-#_c0293cf5db285ab44302650b127d8d1c | p@chr17:32314379..32314387, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr20:22449463..22449467,-#_c0293cf5db285ab44302650b127d8d1c | p@chr20:22449463..22449467, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr20:21918392..21918404,+#_c0293cf5db285ab44302650b127d8d1c | p@chr20:21918392..21918404, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr17:27892922..27892925,+#_c0293cf5db285ab44302650b127d8d1c | p@chr17:27892922..27892925, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:4810204..4810210,+#_c0293cf5db285ab44302650b127d8d1c | p34@ITPR1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:182548451..182548457,-#_c0293cf5db285ab44302650b127d8d1c | p@chr2:182548451..182548457, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:2436040..2436051,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2436040..2436051, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:121058540..121058543,-#_c0293cf5db285ab44302650b127d8d1c | p@chr8:121058540..121058543, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:2439293..2439304,-#_c0293cf5db285ab44302650b127d8d1c | p@chr11:2439293..2439304, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:41508626..41508633,+#_c0293cf5db285ab44302650b127d8d1c | p@chr8:41508626..41508633, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:20705180..20705181,+#_c0293cf5db285ab44302650b127d8d1c | p@chr6:20705180..20705181, + |
