Personal tools

Difference between revisions of "UBERON:0001560"

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0001560 |name=neck of organ |namespace= |def= |xref=FMA:45733 |is_a=UBERON:0000064 |synonym="organ neck" EXACT [] |comment= |alt_id=UBERON:FMA_457...")
 
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{UBERON
 
{{UBERON
|id=UBERON:0001560
+
|alt_id=UBERON:FMA_45733-MA_0000589
|name=neck of organ
 
|namespace=
 
|def=
 
|xref=FMA:45733
 
|is_a=UBERON:0000064
 
|synonym="organ neck" EXACT []
 
 
|comment=
 
|comment=
|alt_id=UBERON:FMA_45733-MA_0000589
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def=
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0001560
 +
|is_a=UBERON:0000064
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=neck of organ
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 +
|subset=
 +
|synonym="organ neck" EXACT []
 +
|union_of=
 +
|xref=FMA:45733
 
}}
 
}}

Latest revision as of 08:19, 12 September 2014

Name:neck of organ
Namespace:FANTOM
Xrefs:
links:
FMA:45733
Synonyms: "organ neck" EXACT []
Alt_id: UBERON:FMA_45733-MA_0000589

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0000002 (uterine cervix)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001560 (neck of organ), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.22e-44FFCP PHASE1:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93fp5@TDRD9
1.22e-44FFCP PHASE2:Hg19::chr14:104394868..104394874,+#_5cf805f22de7660727e808135d75c93fp5@TDRD9
4.27e-34FFCP PHASE1:Hg19::chr1:207193762..207193766,+#_c0293cf5db285ab44302650b127d8d1cp@chr1:207193762..207193766, +
4.27e-34FFCP PHASE2:Hg19::chr17:27892945..27892952,+#_c0293cf5db285ab44302650b127d8d1cp@chr17:27892945..27892952, +
4.27e-34FFCP PHASE1:Hg19::chr8:41485173..41485181,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485173..41485181, -
4.27e-34FFCP PHASE2:Hg19::chr19:7184762..7184771,-#_c0293cf5db285ab44302650b127d8d1cp@chr19:7184762..7184771, -
4.27e-34FFCP PHASE2:Hg19::chr9:35237473..35237478,+#_c0293cf5db285ab44302650b127d8d1cp@chr9:35237473..35237478, +
4.27e-34FFCP PHASE1:Hg19::chr7:127260123..127260165,+#_c0293cf5db285ab44302650b127d8d1cp@chr7:127260123..127260165, +
4.27e-34FFCP PHASE2:Hg19::chr4:4501551..4501558,-#_c0293cf5db285ab44302650b127d8d1cp@chr4:4501551..4501558, -
4.27e-34FFCP PHASE1:Hg19::chr12:131117194..131117202,-#_c0293cf5db285ab44302650b127d8d1cp@chr12:131117194..131117202, -
4.27e-34FFCP PHASE2:Hg19::chr3:181432833..181432842,+#_c0293cf5db285ab44302650b127d8d1c+, p@chr3:181432833..181432842
4.27e-34FFCP PHASE2:Hg19::chr8:41508303..41508308,-#_c0293cf5db285ab44302650b127d8d1cp2@NKX6-3
4.27e-34FFCP PHASE1:Hg19::chr11:2436082..2436085,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436082..2436085, -
4.27e-34FFCP PHASE2:Hg19::chr17:39150341..39150346,-#_c0293cf5db285ab44302650b127d8d1cp2@KRTAP3-3
4.27e-34FFCP PHASE1:Hg19::chr20:21918384..21918387,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918384..21918387, +
4.27e-34FFCP PHASE1:Hg19::chr1:153371709..153371712,-#_c0293cf5db285ab44302650b127d8d1cp@chr1:153371709..153371712, -
4.27e-34FFCP PHASE1:Hg19::chr4:148401920..148401930,+#_c0293cf5db285ab44302650b127d8d1cp7@EDNRA
4.27e-34FFCP PHASE2:Hg19::chr3:187008638..187008641,+#_c0293cf5db285ab44302650b127d8d1cp10@ENST00000541007, p6@uc003frl.2
4.27e-34FFCP PHASE2:Hg19::chr20:2361545..2361557,+#_c0293cf5db285ab44302650b127d8d1cp1@TGM6
4.27e-34FFCP PHASE1:Hg19::chr14:23465559..23465575,-#_c0293cf5db285ab44302650b127d8d1cp@chr14:23465559..23465575, -
4.27e-34FFCP PHASE1:Hg19::chr2:933356..933367,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:933356..933367, -
4.27e-34FFCP PHASE2:Hg19::chr11:2436541..2436561,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436541..2436561, -
4.27e-34FFCP PHASE2:Hg19::chr8:121056304..121056311,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121056304..121056311, -
4.27e-34FFCP PHASE2:Hg19::chr12:14849414..14849417,-#_c0293cf5db285ab44302650b127d8d1cp8@GUCY2C
4.27e-34FFCP PHASE1:Hg19::chr10:62029969..62029974,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:62029969..62029974, -
4.27e-34FFCP PHASE2:Hg19::chr6:49467678..49467693,+#_c0293cf5db285ab44302650b127d8d1cp2@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr2:182548440..182548448,-#_c0293cf5db285ab44302650b127d8d1c-, p@chr2:182548440..182548448
4.27e-34FFCP PHASE1:Hg19::chr20:43727212..43727217,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:43727212..43727217, -
4.27e-34FFCP PHASE2:Hg19::chr20:21918470..21918480,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918470..21918480, +
4.27e-34FFCP PHASE1:Hg19::chr8:121056549..121056554,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121056549..121056554, -
4.27e-34FFCP PHASE2:Hg19::chr4:163124750..163124764,-#_c0293cf5db285ab44302650b127d8d1cp@chr4:163124750..163124764, -
4.27e-34FFCP PHASE2:Hg19::chr6:39290815..39290820,-#_c0293cf5db285ab44302650b127d8d1cp6@KCNK16
4.27e-34FFCP PHASE1:Hg19::chr19:16838056..16838070,+#_c0293cf5db285ab44302650b127d8d1c+, p@chr19:16838056..16838070
4.27e-34FFCP PHASE2:Hg19::chr17:26911586..26911592,-#_c0293cf5db285ab44302650b127d8d1cp9@SPAG5
4.27e-34FFCP PHASE2:Hg19::chr7:127260123..127260165,+#_c0293cf5db285ab44302650b127d8d1cp@chr7:127260123..127260165, +
4.27e-34FFCP PHASE1:Hg19::chr20:22449463..22449467,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:22449463..22449467, -
4.27e-34FFCP PHASE2:Hg19::chr17:79225428..79225433,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:79225428..79225433, -
4.27e-34FFCP PHASE1:Hg19::chr9:91077381..91077392,+#_c0293cf5db285ab44302650b127d8d1cp@chr9:91077381..91077392, +
4.27e-34FFCP PHASE1:Hg19::chr10:99550654..99550658,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:99550654..99550658, -
4.27e-34FFCP PHASE1:Hg19::chr3:4810204..4810210,+#_c0293cf5db285ab44302650b127d8d1cp34@ITPR1
4.27e-34FFCP PHASE2:Hg19::chr3:180892861..180892862,+#_c0293cf5db285ab44302650b127d8d1cp31@SOX2-OT
4.27e-34FFCP PHASE1:Hg19::chr17:27892902..27892907,+#_c0293cf5db285ab44302650b127d8d1cp@chr17:27892902..27892907, +
4.27e-34FFCP PHASE2:Hg19::chr6:129597668..129597672,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:129597668..129597672, +
4.27e-34FFCP PHASE2:Hg19::chr8:121066549..121066554,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121066549..121066554, -
4.27e-34FFCP PHASE1:Hg19::chr9:35237473..35237478,+#_c0293cf5db285ab44302650b127d8d1cp@chr9:35237473..35237478, +
4.27e-34FFCP PHASE2:Hg19::chr2:182548440..182548448,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:182548440..182548448, -
4.27e-34FFCP PHASE1:Hg19::chr6:49467630..49467640,+#_c0293cf5db285ab44302650b127d8d1cp3@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr8:41485173..41485181,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485173..41485181, -
4.27e-34FFCP PHASE1:Hg19::chr22:32555214..32555221,-#_c0293cf5db285ab44302650b127d8d1cp2@C22orf42
4.27e-34FFCP PHASE2:Hg19::chr7:150871938..150871949,-#_c0293cf5db285ab44302650b127d8d1cp3@GBX1
4.27e-34FFCP PHASE2:Hg19::chr20:45400010..45400026,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:45400010..45400026, -
4.27e-34FFCP PHASE2:Hg19::chr12:131117194..131117202,-#_c0293cf5db285ab44302650b127d8d1cp@chr12:131117194..131117202, -
4.27e-34FFCP PHASE1:Hg19::chr3:180892861..180892862,+#_c0293cf5db285ab44302650b127d8d1cp31@SOX2-OT
4.27e-34FFCP PHASE2:Hg19::chr6:152084890..152084896,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:152084890..152084896, +
4.27e-34FFCP PHASE2:Hg19::chr21:47588743..47588750,-#_c0293cf5db285ab44302650b127d8d1cp9@C21orf56
4.27e-34FFCP PHASE2:Hg19::chr20:21918384..21918387,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918384..21918387, +
4.27e-34FFCP PHASE1:Hg19::chr8:41485201..41485208,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41485201..41485208, -
4.27e-34FFCP PHASE1:Hg19::chr6:129597668..129597672,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:129597668..129597672, +
4.27e-34FFCP PHASE2:Hg19::chr19:7184803..7184814,-#_c0293cf5db285ab44302650b127d8d1cp@chr19:7184803..7184814, -
4.27e-34FFCP PHASE1:Hg19::chr10:18689637..18689645,+#_c0293cf5db285ab44302650b127d8d1cp28@CACNB2
4.27e-34FFCP PHASE2:Hg19::chr18:74350663..74350688,-#_c0293cf5db285ab44302650b127d8d1cp@chr18:74350663..74350688, -
4.27e-34FFCP PHASE1:Hg19::chr5:170105957..170105992,-#_c0293cf5db285ab44302650b127d8d1cp@chr5:170105957..170105992, -
4.27e-34FFCP PHASE1:Hg19::chr11:2436541..2436561,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2436541..2436561, -
4.27e-34FFCP PHASE1:Hg19::chr17:32314322..32314327,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:32314322..32314327, -
4.27e-34FFCP PHASE1:Hg19::chr4:22737597..22737604,+#_c0293cf5db285ab44302650b127d8d1cp@chr4:22737597..22737604, +
4.27e-34FFCP PHASE2:Hg19::chr5:160356414..160356417,-#_c0293cf5db285ab44302650b127d8d1cp@chr5:160356414..160356417, -
4.27e-34FFCP PHASE1:Hg19::chr20:21918392..21918404,+#_c0293cf5db285ab44302650b127d8d1cp@chr20:21918392..21918404, +
4.27e-34FFCP PHASE2:Hg19::chr11:2439293..2439304,-#_c0293cf5db285ab44302650b127d8d1cp@chr11:2439293..2439304, -
4.27e-34FFCP PHASE1:Hg19::chr6:152084846..152084856,+#_c0293cf5db285ab44302650b127d8d1c+, p@chr6:152084846..152084856
4.27e-34FFCP PHASE2:Hg19::chr8:121056349..121056360,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121056349..121056360, -
4.27e-34FFCP PHASE2:Hg19::chr14:57052405..57052416,+#_c0293cf5db285ab44302650b127d8d1cp4@C14orf101
4.27e-34FFCP PHASE2:Hg19::chr6:49467718..49467724,+#_c0293cf5db285ab44302650b127d8d1cp4@GLYATL3
4.27e-34FFCP PHASE1:Hg19::chr6:39290815..39290820,-#_c0293cf5db285ab44302650b127d8d1cp6@KCNK16
4.27e-34FFCP PHASE1:Hg19::chr2:182548451..182548457,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:182548451..182548457, -
4.27e-34FFCP PHASE2:Hg19::chr20:22449463..22449467,-#_c0293cf5db285ab44302650b127d8d1cp@chr20:22449463..22449467, -
4.27e-34FFCP PHASE1:Hg19::chr8:121058540..121058543,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:121058540..121058543, -
4.27e-34FFCP PHASE2:Hg19::chr22:44377129..44377137,+#_c0293cf5db285ab44302650b127d8d1cp@chr22:44377129..44377137, +
4.27e-34FFCP PHASE2:Hg19::chr22:47425875..47425879,-#_c0293cf5db285ab44302650b127d8d1cp@chr22:47425875..47425879, -
4.27e-34FFCP PHASE1:Hg19::chr2:165706192..165706200,+#_c0293cf5db285ab44302650b127d8d1cp@chr2:165706192..165706200, +
4.27e-34FFCP PHASE1:Hg19::chr12:14849447..14849450,-#_c0293cf5db285ab44302650b127d8d1cp7@GUCY2C
4.27e-34FFCP PHASE2:Hg19::chr2:933356..933367,-#_c0293cf5db285ab44302650b127d8d1c-, p@chr2:933356..933367
4.27e-34FFCP PHASE2:Hg19::chr10:62030063..62030071,-#_c0293cf5db285ab44302650b127d8d1cp@chr10:62030063..62030071, -
4.27e-34FFCP PHASE2:Hg19::chr17:39755914..39755961,-#_c0293cf5db285ab44302650b127d8d1cp@chr17:39755914..39755961, -
4.27e-34FFCP PHASE2:Hg19::chr17:26911596..26911605,-#_c0293cf5db285ab44302650b127d8d1cp8@SPAG5
4.27e-34FFCP PHASE1:Hg19::chr8:41484957..41484961,-#_c0293cf5db285ab44302650b127d8d1cp@chr8:41484957..41484961, -
4.27e-34FFCP PHASE2:Hg19::chr6:20705180..20705181,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:20705180..20705181, +
4.27e-34FFCP PHASE2:Hg19::chr4:148401920..148401930,+#_c0293cf5db285ab44302650b127d8d1cp7@EDNRA
4.27e-34FFCP PHASE1:Hg19::chr17:39150341..39150346,-#_c0293cf5db285ab44302650b127d8d1cp2@KRTAP3-3
4.27e-34FFCP PHASE1:Hg19::chr7:127258120..127258138,-#_c0293cf5db285ab44302650b127d8d1cp3@PAX4
4.27e-34FFCP PHASE1:Hg19::chr8:80963666..80963669,-#_c0293cf5db285ab44302650b127d8d1cp37@TPD52
4.27e-34FFCP PHASE2:Hg19::chr1:70826186..70826193,-#_c0293cf5db285ab44302650b127d8d1cp4@ENST00000413943
4.27e-34FFCP PHASE1:Hg19::chr6:25661559..25661563,+#_c0293cf5db285ab44302650b127d8d1cp@chr6:25661559..25661563, +
4.27e-34FFCP PHASE1:Hg19::chr12:131117116..131117123,-#_c0293cf5db285ab44302650b127d8d1cp@chr12:131117116..131117123, -
4.27e-34FFCP PHASE1:Hg19::chr17:27892922..27892925,+#_c0293cf5db285ab44302650b127d8d1cp@chr17:27892922..27892925, +
4.27e-34FFCP PHASE1:Hg19::chr22:44569031..44569036,+#_c0293cf5db285ab44302650b127d8d1cp27@PARVG
4.27e-34FFCP PHASE1:Hg19::chr3:187008638..187008641,+#_c0293cf5db285ab44302650b127d8d1cp10@ENST00000541007, p6@uc003frl.2
4.27e-34FFCP PHASE2:Hg19::chr2:182548451..182548457,-#_c0293cf5db285ab44302650b127d8d1cp@chr2:182548451..182548457, -
4.27e-34FFCP PHASE1:Hg19::chr6:49467646..49467657,+#_c0293cf5db285ab44302650b127d8d1cp1@GLYATL3
4.27e-34FFCP PHASE2:Hg19::chr8:41485201..41485208,-#_c0293cf5db285ab44302650b127d8d1c-, p@chr8:41485201..41485208
4.27e-34FFCP PHASE1:Hg19::chr5:40984132..40984133,+#_c0293cf5db285ab44302650b127d8d1cp@chr5:40984132..40984133, +