Personal tools

UBERON:0001758

From FANTOM5_SSTAR

Revision as of 08:20, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:periodontium
Namespace:FANTOM
Definition:"The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
Xrefs:
links:

BTO:0001021
FMA:56665
GAID:216
[1]
MESH:A.14.254.646

ncithesaurus:Periodontium
Synonyms: "paradentium" RELATED [MESH:A.14.254.646]
"periodontal ligament" RELATED INCONSISTENT [FMA:56665]
"periodontal membrane" RELATED [MA:0002467]
"tooth supporting structure" RELATED [MESH:A.14.254.646]
Comments:note FMA treats periodontium and periodontal ligament as the same
Alt_id: UBERON:FMA_56665-MA_0002467

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000479(tissue)
part_of:UBERON:0003672(dentition)



Children

part of:CL:0002556 (fibroblast of periodontium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001758 (periodontium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.06e-63FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_19c8670d68dde466e135758d5df20e7ap1@ENST00000427892, p1@uc001dgp.1
7.06e-63FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_19c8670d68dde466e135758d5df20e7ap1@ENST00000427892, p1@uc001dgp.1
1.23e-62FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_a6fe15afb18b9ba4988c32de6f3d268dp@chr1:75599683..75599699, -
1.23e-62FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_a6fe15afb18b9ba4988c32de6f3d268d-, p@chr1:75599683..75599699
2.45e-58FFCP PHASE1:Hg19::chr6:707779..707821,+#_4ccc82409135baca1cf00e06ceb1a32cp@chr6:707779..707821, +
2.45e-58FFCP PHASE2:Hg19::chr6:707779..707821,+#_4ccc82409135baca1cf00e06ceb1a32cp@chr6:707779..707821, +
4.63e-53FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_2545d83fe9d8060ae2f78feca69a5b01p@chr1:75599672..75599682, -
4.63e-53FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_2545d83fe9d8060ae2f78feca69a5b01p@chr1:75599672..75599682, -
9.31e-47FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_2fc01b4fe5fa7634c9d426b74cc7fc43p2@LHX8
9.31e-47FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_2fc01b4fe5fa7634c9d426b74cc7fc43p2@LHX8
4.34e-43FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_379e0d2d4c198fdebc462c11570c09c4p1@LHX8
4.34e-43FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_379e0d2d4c198fdebc462c11570c09c4p1@LHX8
1.34e-37FFCP PHASE2:Hg19::chr6:129908113..129908144,-#_7fb499d54af7a0f555c92a3a3be6cc65p@chr6:129908113..129908144, -
1.34e-37FFCP PHASE1:Hg19::chr6:129908113..129908144,-#_7fb499d54af7a0f555c92a3a3be6cc65p@chr6:129908113..129908144, -
5.69e-35FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_49643a93e1c8481891d6aa53155a9a12p@chr2:172953513..172953549, -
5.69e-35FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_49643a93e1c8481891d6aa53155a9a12p@chr2:172953513..172953549, -
1.19e-32FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_d6ef6faef80827b15c3de0493bcefdc2p4@FOXF2
1.19e-32FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_d6ef6faef80827b15c3de0493bcefdc2p4@FOXF2
2.68e-31FFCP PHASE1:Hg19::chr18:34273182..34273194,+#_80caf3ab903823203055f7aec1da18d5p6@FHOD3
2.68e-31FFCP PHASE2:Hg19::chr18:34273182..34273194,+#_80caf3ab903823203055f7aec1da18d5p6@FHOD3
2.78e-30FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_0c23777be41d4e5e8e64b9164b36af06p18@SH3D19
2.78e-30FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_0c23777be41d4e5e8e64b9164b36af06p18@SH3D19
7.33e-29FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_2b5414c617419e14060ed3b4de6883b5p@chr6:1389613..1389637, -
7.33e-29FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_2b5414c617419e14060ed3b4de6883b5p@chr6:1389613..1389637, -
2.08e-27FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_28b84382fdbf1e61382a853e5ced297a+, p@chr12:115777087..115777091
2.08e-27FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_28b84382fdbf1e61382a853e5ced297ap@chr12:115777087..115777091, +
2.21e-25FFCP PHASE2:Hg19::chr11:7987028..7987043,-#_4dba9097502e6ad6e8a74f112c15a974p2@NLRP10
2.21e-25FFCP PHASE1:Hg19::chr11:7987028..7987043,-#_4dba9097502e6ad6e8a74f112c15a974p2@NLRP10
4.34e-23FFCP PHASE1:Hg19::chr1:75600979..75601005,+#_4e6b95766999864e5db9dfb9018bdb36p@chr1:75600979..75601005, +
4.34e-23FFCP PHASE2:Hg19::chr1:75600979..75601005,+#_4e6b95766999864e5db9dfb9018bdb36p@chr1:75600979..75601005, +
3.51e-22FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_766a371db65db97bf25981adb699289ap@chr18:65337698..65337712, +
3.51e-22FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_766a371db65db97bf25981adb699289ap@chr18:65337698..65337712, +
6.23e-22FFCP PHASE1:Hg19::chr1:31882992..31883005,+#_3e617948c6149036d7afafd342137c2bp14@SERINC2
6.23e-22FFCP PHASE2:Hg19::chr1:31882992..31883005,+#_3e617948c6149036d7afafd342137c2bp14@SERINC2
4.63e-21FFCP PHASE1:Hg19::chr9:96717678..96717689,-#_461373c1917def380539eb8e0f264aa7p2@BARX1
4.63e-21FFCP PHASE2:Hg19::chr9:96717678..96717689,-#_461373c1917def380539eb8e0f264aa7p2@BARX1
5.39e-21FFCP PHASE2:Hg19::chr10:28034772..28034783,-#_2b24f87f068816f7cfb9e8674eeb74eep4@MKX
5.39e-21FFCP PHASE1:Hg19::chr10:28034772..28034783,-#_2b24f87f068816f7cfb9e8674eeb74eep4@MKX
4.99e-20FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_e205b0daef08902e8ff3c6ee268a4e92p2@PAX9
4.99e-20FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_e205b0daef08902e8ff3c6ee268a4e92p2@PAX9
5.89e-20FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_977750e6db63f72ac7d0864cc6761d7ep@chr1:75602768..75602785, +
5.89e-20FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_977750e6db63f72ac7d0864cc6761d7e+, p@chr1:75602768..75602785
6.5e-20FFCP PHASE2:Hg19::chr6:148761434..148761452,+#_aa6e6b0261f3c7eb4090a274614dc9fdp11@SASH1
6.5e-20FFCP PHASE1:Hg19::chr6:148761434..148761452,+#_aa6e6b0261f3c7eb4090a274614dc9fdp11@SASH1
3.13e-18FFCP PHASE2:Hg19::chr8:57354324..57354335,-#_a9cc7109c07806d421dc8b51f08a6d17p@chr8:57354324..57354335, -
3.13e-18FFCP PHASE1:Hg19::chr8:57354324..57354335,-#_a9cc7109c07806d421dc8b51f08a6d17-, p@chr8:57354324..57354335
3.96e-18FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_7291bc68ad1f2ec232438a6b90252b76p@chr1:83982415..83982420, +
3.96e-18FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_7291bc68ad1f2ec232438a6b90252b76p@chr1:83982415..83982420, +
4.73e-18FFCP PHASE2:Hg19::chr10:24738381..24738397,+#_5168fd95183bfac8315e8a7b812c475fp17@KIAA1217
4.73e-18FFCP PHASE1:Hg19::chr10:24738381..24738397,+#_5168fd95183bfac8315e8a7b812c475fp17@KIAA1217
6.46e-18FFCP PHASE2:Hg19::chr4:108204864..108204887,-#_12ce675e5fb17533affedbb29f1acd46p3@DKK2
6.46e-18FFCP PHASE1:Hg19::chr4:108204864..108204887,-#_12ce675e5fb17533affedbb29f1acd46p3@DKK2
9.07e-18FFCP PHASE1:Hg19::chr1:75602749..75602758,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602749..75602758, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602749..75602758,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602749..75602758, +
9.07e-18FFCP PHASE1:Hg19::chr4:14094655..14094663,+#_0db8c72681a480e9f90258de78a001dfp@chr4:14094655..14094663, +
9.07e-18FFCP PHASE2:Hg19::chr4:14094655..14094663,+#_0db8c72681a480e9f90258de78a001dfp@chr4:14094655..14094663, +
9.07e-18FFCP PHASE1:Hg19::chr1:75602005..75602017,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602005..75602017, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602005..75602017,+#_0db8c72681a480e9f90258de78a001dfp@chr1:75602005..75602017, +
9.28e-18FFCP PHASE2:Hg19::chr6:116479897..116479942,-#_dd18ac16e05c5ee3a96e5e33296523a8p2@COL10A1
9.28e-18FFCP PHASE1:Hg19::chr6:116479897..116479942,-#_dd18ac16e05c5ee3a96e5e33296523a8p2@COL10A1
1.22e-17FFCP PHASE2:Hg19::chr10:15761954..15761965,-#_185801a1f5011fbc24d5b7da86cb4927p7@ITGA8
1.22e-17FFCP PHASE1:Hg19::chr10:15761954..15761965,-#_185801a1f5011fbc24d5b7da86cb4927p7@ITGA8
1.85e-17FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_530abf622f593964ef070205470dfab7p@chr1:241577071..241577081, +
1.85e-17FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_530abf622f593964ef070205470dfab7p@chr1:241577071..241577081, +
3.81e-17FFCP PHASE2:Hg19::chr6:1389647..1389668,-#_573cd7f324f9b583432ed2e2e4245672p@chr6:1389647..1389668, -
3.81e-17FFCP PHASE1:Hg19::chr6:1389647..1389668,-#_573cd7f324f9b583432ed2e2e4245672p@chr6:1389647..1389668, -
4.15e-17FFCP PHASE1:Hg19::chr1:68257383..68257394,-#_52d6aa2f0658c60b7c2c842958665f6bp@chr1:68257383..68257394, -
4.15e-17FFCP PHASE2:Hg19::chr1:68257383..68257394,-#_52d6aa2f0658c60b7c2c842958665f6bp@chr1:68257383..68257394, -
6.03e-17FFCP PHASE2:Hg19::chr6:148761457..148761478,+#_6f725de4e60ed802bf070ca4fd0de318p8@SASH1
6.03e-17FFCP PHASE1:Hg19::chr6:148761457..148761478,+#_6f725de4e60ed802bf070ca4fd0de318p8@SASH1
2.11e-16FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_3312e6cfccd86e03aac041158c6531d8p@chr4:47857451..47857469, -
2.11e-16FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_3312e6cfccd86e03aac041158c6531d8p@chr4:47857451..47857469, -
2.59e-16FFCP PHASE2:Hg19::chr15:33406335..33406350,-#_bb8738ac6dfc320131ae1149d4b28e3bp@chr15:33406335..33406350, -
2.59e-16FFCP PHASE1:Hg19::chr15:33406335..33406350,-#_bb8738ac6dfc320131ae1149d4b28e3bp@chr15:33406335..33406350, -
3.17e-16FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_299809e2dba403a1d55f27dcaedfdb89p1@ENST00000555639
3.17e-16FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_299809e2dba403a1d55f27dcaedfdb89p1@ENST00000555639
4.64e-16FFCP PHASE1:Hg19::chr18:34273196..34273214,+#_75f6336a96b46cd26640f4158094bfdbp2@FHOD3
4.64e-16FFCP PHASE2:Hg19::chr18:34273196..34273214,+#_75f6336a96b46cd26640f4158094bfdbp2@FHOD3
7.23e-16FFCP PHASE1:Hg19::chr3:37204870..37204881,-#_fa6212d2d2afb85828d7ac852909f6adp@chr3:37204870..37204881, -
7.23e-16FFCP PHASE2:Hg19::chr3:37204870..37204881,-#_fa6212d2d2afb85828d7ac852909f6adp@chr3:37204870..37204881, -
1.02e-15FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_e029331023a882eeda8f903bd53cf99dp1@ENST00000449986
1.02e-15FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_e029331023a882eeda8f903bd53cf99dp1@ENST00000449986
1.12e-15FFCP PHASE2:Hg19::chr4:152090554..152090566,+#_3889b98fd0800a10fd217a59856e6f4ep@chr4:152090554..152090566, +
1.12e-15FFCP PHASE1:Hg19::chr4:152090554..152090566,+#_3889b98fd0800a10fd217a59856e6f4ep@chr4:152090554..152090566, +
1.13e-15FFCP PHASE1:Hg19::chr18:59685444..59685459,-#_4393fe8f83aeb347309481bd6e5831b6p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE2:Hg19::chr8:57354211..57354220,+#_4393fe8f83aeb347309481bd6e5831b6+, p@chr8:57354211..57354220
1.13e-15FFCP PHASE1:Hg19::chr8:57354211..57354220,+#_4393fe8f83aeb347309481bd6e5831b6p@chr8:57354211..57354220, +
1.13e-15FFCP PHASE2:Hg19::chr18:59685444..59685459,-#_4393fe8f83aeb347309481bd6e5831b6p@chr18:59685444..59685459, -
1.31e-15FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fe82443a209b961a56426b4862485939p4@LHX8
1.31e-15FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fe82443a209b961a56426b4862485939p4@LHX8
1.31e-15FFCP PHASE1:Hg19::chr4:13890014..13890023,+#_fe82443a209b961a56426b4862485939p@chr4:13890014..13890023, +
1.31e-15FFCP PHASE2:Hg19::chr4:13890014..13890023,+#_fe82443a209b961a56426b4862485939p@chr4:13890014..13890023, +
2.33e-15FFCP PHASE1:Hg19::chr10:28033614..28033628,-#_b4880690db1604ab36c0453f7666a734p@chr10:28033614..28033628, -
2.33e-15FFCP PHASE2:Hg19::chr10:28033614..28033628,-#_b4880690db1604ab36c0453f7666a734p@chr10:28033614..28033628, -
4.6e-15FFCP PHASE2:Hg19::chr8:57354251..57354262,-#_0653b56faca2fafdf3fab7dcc951906fp@chr8:57354251..57354262, -
4.6e-15FFCP PHASE1:Hg19::chr8:57354251..57354262,-#_0653b56faca2fafdf3fab7dcc951906fp@chr8:57354251..57354262, -
5.3e-15FFCP PHASE2:Hg19::chr7:134005080..134005095,-#_5db111254dacf1dd580cbbed411cd570p@chr7:134005080..134005095, -
5.3e-15FFCP PHASE1:Hg19::chr7:134005080..134005095,-#_5db111254dacf1dd580cbbed411cd570p@chr7:134005080..134005095, -
5.54e-15FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_3d7952b4333758c80a8be6b8d2b0b5adp@chr17:78808278..78808309, -
5.54e-15FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_3d7952b4333758c80a8be6b8d2b0b5adp@chr17:78808278..78808309, -