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UBERON:0002104

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Name:visual system
Namespace:FANTOM
Definition:"." [Wikipedia:Visual_system]
Xrefs:
links:

AAO:0000632
FMA:7191
MA:0002444
ncithesaurus:Visual_System
NIF_GrossAnatomy:FMAID_7191
OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
SCTID:281831001
TAO:0001127
XAO:0003198

ZFA:0001127
Synonyms: "visual organ system" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0000941 (cranial nerve II),UBERON:0000970 (eye),UBERON:0004904 (nerve connecting eye with brain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002104 (visual system), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9-, p@chr16:21743134..21743139
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p4@Dct
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p6@Celf1
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr10:127668442..127668453, +
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818263..31818276, +
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p6@Celf1
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9p@chr17:31818106..31818119, +
3.94e-79FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412p10@SIX3
3.94e-79FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412p10@SIX3
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdfp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdfp3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdfp@chr7:64675015..64675028, +
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdfp@chr7:64675015..64675028, +
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165fp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165fp@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165fp6@Pax6
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165fp6@Pax6
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816p1@4933429O19Rik
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816p1@4933429O19Rik
4.97e-77FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_68da2ef74d650f130a3759934aadb399p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_68da2ef74d650f130a3759934aadb399p1@Cngb3
4.97e-77FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_68da2ef74d650f130a3759934aadb399p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_68da2ef74d650f130a3759934aadb399p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_68da2ef74d650f130a3759934aadb399p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_68da2ef74d650f130a3759934aadb399p1@Rrh
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_68da2ef74d650f130a3759934aadb399p1@ENSMUST00000173365
4.97e-77FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_68da2ef74d650f130a3759934aadb399p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_68da2ef74d650f130a3759934aadb399p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_68da2ef74d650f130a3759934aadb399p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_68da2ef74d650f130a3759934aadb399p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_68da2ef74d650f130a3759934aadb399p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_68da2ef74d650f130a3759934aadb399p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_68da2ef74d650f130a3759934aadb399p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_68da2ef74d650f130a3759934aadb399p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_68da2ef74d650f130a3759934aadb399p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_68da2ef74d650f130a3759934aadb399p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_68da2ef74d650f130a3759934aadb399p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_68da2ef74d650f130a3759934aadb399p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_68da2ef74d650f130a3759934aadb399p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_68da2ef74d650f130a3759934aadb399p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_68da2ef74d650f130a3759934aadb399p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_68da2ef74d650f130a3759934aadb399p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_68da2ef74d650f130a3759934aadb399p2@Hsd17b12
4.97e-77FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_68da2ef74d650f130a3759934aadb399p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_68da2ef74d650f130a3759934aadb399p11@Rnf123
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_68da2ef74d650f130a3759934aadb399p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_68da2ef74d650f130a3759934aadb399p3@Rrh
4.97e-77FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_68da2ef74d650f130a3759934aadb399p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_68da2ef74d650f130a3759934aadb399p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_68da2ef74d650f130a3759934aadb399p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_68da2ef74d650f130a3759934aadb399p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_68da2ef74d650f130a3759934aadb399p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_68da2ef74d650f130a3759934aadb399p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_68da2ef74d650f130a3759934aadb399p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_68da2ef74d650f130a3759934aadb399p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_68da2ef74d650f130a3759934aadb399p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_68da2ef74d650f130a3759934aadb399p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_68da2ef74d650f130a3759934aadb399p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_68da2ef74d650f130a3759934aadb399p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_68da2ef74d650f130a3759934aadb399p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_68da2ef74d650f130a3759934aadb399p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_68da2ef74d650f130a3759934aadb399p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_68da2ef74d650f130a3759934aadb399p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_68da2ef74d650f130a3759934aadb399p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_68da2ef74d650f130a3759934aadb399p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_68da2ef74d650f130a3759934aadb399p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399p@chr5:112698505..112698537, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.