Difference between revisions of "UBERON:0002120"
From FANTOM5_SSTAR
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=pronephros | |name=pronephros | ||
| − | |namespace= | + | |namespace=FANTOM |
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003887 | |part_of=UBERON:0003887 | ||
Latest revision as of 08:26, 12 September 2014
| Name: | pronephros | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros] | ||
| Xrefs: |
| ||
| Synonyms: |
"archinephron" RELATED [BTO:0001541] "embryonic kidney" RELATED [BTO:0001541] "pronephric kidney" EXACT [XAO:0002000] "pronephron" RELATED [BTO:0001541] | ||
| Comments: | Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 | ||
| Alt_id: |
UBERON:0005794 UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
| is_a: | UBERON:0002113(kidney),UBERON:0004120(mesoderm-derived structure),UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0005095(kidney rudiment),UBERON:0005721(pronephric mesoderm),UBERON:0005754(rostral part of nephrogenic cord) |
| part_of: | UBERON:0003887(intraembryonic coelom) |
Children
| develops from: | UBERON:0000080 (mesonephros) |
|---|---|
| part of: | UBERON:0003060 (pronephric duct) |
Ontology Tree: Loaded from BioPortal
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002120 (pronephros), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | +, p@chr10:127470655..127470664 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Defb42 |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_af7b1b4569a348edf7a14b3894a630b9 | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_af7b1b4569a348edf7a14b3894a630b9 | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_e8dbb8ce83e3899a975c53ac0cdc786a | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_e8dbb8ce83e3899a975c53ac0cdc786a | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_322454c4f87acb7a8bb5c7fee7d231dd | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_322454c4f87acb7a8bb5c7fee7d231dd | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_322454c4f87acb7a8bb5c7fee7d231dd | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_322454c4f87acb7a8bb5c7fee7d231dd | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585048..63585062, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_9b36385b482b36b725c8708169c94498 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_9b36385b482b36b725c8708169c94498 | -, p@chr9:26611246..26611253 |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_9b36385b482b36b725c8708169c94498 | +, p@chr9:26732045..26732085 |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_9b36385b482b36b725c8708169c94498 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_9b36385b482b36b725c8708169c94498 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_9b36385b482b36b725c8708169c94498 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_9b36385b482b36b725c8708169c94498 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_9b36385b482b36b725c8708169c94498 | p@chr14:63627556..63627564, - |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_273d5d205d9097d342700cc2315da66f | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_273d5d205d9097d342700cc2315da66f | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_b3a253cd914072d2cfaeec44686052b5 | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_b3a253cd914072d2cfaeec44686052b5 | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_b3a253cd914072d2cfaeec44686052b5 | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_b3a253cd914072d2cfaeec44686052b5 | p10@PAX2 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_b3a253cd914072d2cfaeec44686052b5 | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_b3a253cd914072d2cfaeec44686052b5 | p@chr1:172416185..172416189, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:73221034..73221051,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr17:73221034..73221051, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:110132148..110132154,+#_e3a90d78abdf29a422505aa2b2f1e632 | p3@Wdr25 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:24865194..24865204,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr17:24865194..24865204, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:23057222..23057234,+#_e3a90d78abdf29a422505aa2b2f1e632 | p1@Defb13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:155722142..155722175,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:155722142..155722175, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52542831..52542836,-#_e3a90d78abdf29a422505aa2b2f1e632 | p4@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_e3a90d78abdf29a422505aa2b2f1e632 | p5@Spink12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378774..21378782,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21378774..21378782, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:16664708..16664723,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr12:16664708..16664723, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:66521865..66521876,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr14:66521865..66521876, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379437..31379448,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:31379437..31379448, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:103896072..103896081,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr12:103896072..103896081, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379486..31379501,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:31379486..31379501, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379098..21379104,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21379098..21379104, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90156002..90156013,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:90156002..90156013, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164479326..164479336,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr2:164479326..164479336, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:69116075..69116107,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr14:69116075..69116107, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164499572..164499580,-#_e3a90d78abdf29a422505aa2b2f1e632 | p2@Wfdc11 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:155698166..155698174,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:155698166..155698174, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:36016859..36016897,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:36016859..36016897, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:35930667..35930691,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:35930667..35930691, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:70761885..70761895,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr9:70761885..70761895, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:18338054..18338077,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr6:18338054..18338077, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:14306714..14306740,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr17:14306714..14306740, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:22061771..22061777,-#_e3a90d78abdf29a422505aa2b2f1e632 | p3@Gm6040, p3@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:65941913..65941923,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr9:65941913..65941923, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:53938008..53938022,+#_e3a90d78abdf29a422505aa2b2f1e632 | p11@P4ha2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:137325863..137325870,-#_e3a90d78abdf29a422505aa2b2f1e632 | p15@Alpl |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:59845376..59845393,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:59845376..59845393, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101958876..101958883,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:101958876..101958883, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678915..54678922,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr15:54678915..54678922, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155951..90155962,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:90155951..90155962, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:110131571..110131579,-#_e3a90d78abdf29a422505aa2b2f1e632 | p15@Wars |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_e3a90d78abdf29a422505aa2b2f1e632 | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19141482..19141496,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr8:19141482..19141496, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155707..90155720,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:90155707..90155720, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164439019..164439029,+#_e3a90d78abdf29a422505aa2b2f1e632 | p1@Wfdc6b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:110131610..110131621,-#_e3a90d78abdf29a422505aa2b2f1e632 | p11@Wars |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51680551..51680555,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr14:51680551..51680555, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:59845376..59845393,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:59845376..59845393, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:89597725..89597743,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:89597725..89597743, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:192816674..192816714, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr16:43230846..43230884, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51677155..51677162,-#_e3a90d78abdf29a422505aa2b2f1e632 | p5@Rnase12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35651788..35651804,-#_e3a90d78abdf29a422505aa2b2f1e632 | p1@9230110F15Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958887..101958896,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:101958887..101958896, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:167480413..167480463,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr2:167480413..167480463, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:138824620..138824627,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr4:138824620..138824627, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:126604677..126604701,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr8:126604677..126604701, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:96150839..96150842,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:96150839..96150842, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:151928014..151928021,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr7:151928014..151928021, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:100634942..100634968,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:100634942..100634968, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:103837894..103837900,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr14:103837894..103837900, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:35252614..35252635,-#_e3a90d78abdf29a422505aa2b2f1e632 | p3@Ly6g5b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_e3a90d78abdf29a422505aa2b2f1e632 | p4@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:158083961..158083968,+#_e3a90d78abdf29a422505aa2b2f1e632 | p4@Bpi |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_e3a90d78abdf29a422505aa2b2f1e632 | p21@Pgap2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:92995710..92995753,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr16:92995710..92995753, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51677155..51677162,-#_e3a90d78abdf29a422505aa2b2f1e632 | p5@Rnase12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:18213651..18213663,-#_e3a90d78abdf29a422505aa2b2f1e632 | p1@Defb44-ps |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90368977..90368987,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:90368977..90368987, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:130496286..130496293,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:130496286..130496293, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ that serves as a transient kidney, providing osmoregulation during early developmental stages and then degenerating during metamorphosis.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
