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Difference between revisions of "UBERON:0002394"

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|subset=uberon_slim
 
|subset=uberon_slim
 
|derives_from=
 
|derives_from=
|develops_from=
+
|develops_from=UBERON:0008835
 
|has_quality=
 
|has_quality=
 
|located_in=
 
|located_in=
|part_of=
+
|part_of=UBERON:0001173;;UBERON:0002294
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|is_obsolete=
 
|is_obsolete=
 
|preceded_by=
 
|preceded_by=
 
}}
 
}}

Revision as of 04:32, 27 June 2012

Name:bile duct
Definition:"Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
Xrefs:
links:

AAO:0011019
BTO:0000122
EHDAA2:0000741
EV:0100091
FMA:9706
GAID:280
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0000354
MESH:A.03.159.183
ncithesaurus:Bile_Duct
OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
SCTID:276157007
VHOG:0000212

XAO:0000134
Synonyms: "gall duct" RELATED [BTO:0000122]
"hepatic duct" RELATED []
Comments:The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
Alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0003928(digestive system duct),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0001173(biliary tree),UBERON:0002294(biliary system)



Children

is a:UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct)
derives from:FF:0103910 (bile duct cancer cell line sample)
part of:UBERON:0004820 (bile duct epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_fda5f37fd992588e06a692670ec5eedf+, p@chr15:82207617..82207621
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_fda5f37fd992588e06a692670ec5eedfp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_fda5f37fd992588e06a692670ec5eedfp@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_fda5f37fd992588e06a692670ec5eedf-, p@chr6:92938260..92938264
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_fda5f37fd992588e06a692670ec5eedf+, p@chr10:93819538..93819549
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_fda5f37fd992588e06a692670ec5eedf+, p@chr11:115280630..115280662
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_fda5f37fd992588e06a692670ec5eedfp@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_fda5f37fd992588e06a692670ec5eedfp8@Map3k8
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_fda5f37fd992588e06a692670ec5eedfp6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:52781901..52781904, +
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_fda5f37fd992588e06a692670ec5eedfp@chr16:85547242..85547252, +
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_fda5f37fd992588e06a692670ec5eedf+, p@chr10:94580525..94580530
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_fda5f37fd992588e06a692670ec5eedfp@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_fda5f37fd992588e06a692670ec5eedfp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_fda5f37fd992588e06a692670ec5eedfp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_fda5f37fd992588e06a692670ec5eedfp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_fda5f37fd992588e06a692670ec5eedf-, p@chr18:65159026..65159034
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35094068..35094092, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_fda5f37fd992588e06a692670ec5eedf-, p@chr8:114123814..114123821
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093764..35093773, -