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{{UBERON
{{UBERON
|id=UBERON:0002394
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134
|name=bile duct
|namespace=
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|xref=AAO:0011019;;BTO:0000122;;EHDAA2:0000741;;EV:0100091;;FMA:9706;;GAID:280;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0000354;;MESH:A.03.159.183;;ncithesaurus:Bile_Duct;;OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA;;SCTID:276157007;;VHOG:0000212;;XAO:0000134
|is_a=UBERON:0003928;;UBERON:0004119
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED []
|comment=The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
|comment=The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0008835
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002394
|is_a=UBERON:0003928 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=bile duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001173;;UBERON:0002294
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED []
|union_of=
|xref=AAO:0011019;;BTO:0000122;;EHDAA2:0000741;;EV:0100091;;FMA:9706;;GAID:280;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0000354;;MESH:A.03.159.183;;ncithesaurus:Bile_Duct;;OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA;;SCTID:276157007;;VHOG:0000212;;XAO:0000134
}}
}}

Latest revision as of 17:31, 12 September 2014

Name:bile duct
Namespace:FANTOM
Definition:"Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
Xrefs:
links:

AAO:0011019
BTO:0000122
EHDAA2:0000741
EV:0100091
FMA:9706
GAID:280
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0000354
MESH:A.03.159.183
ncithesaurus:Bile_Duct
OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
SCTID:276157007
VHOG:0000212

XAO:0000134
Synonyms: "gall duct" RELATED [BTO:0000122]
"hepatic duct" RELATED []
Comments:The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
Alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003928(digestive system duct),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0001173(biliary tree),UBERON:0002294(biliary system)



Children

is a:UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct)
derives from:FF:0103910 (bile duct cancer cell line sample)
part of:UBERON:0004820 (bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_fda5f37fd992588e06a692670ec5eedfp@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:81955014..81955018, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_fda5f37fd992588e06a692670ec5eedfp@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_fda5f37fd992588e06a692670ec5eedfp@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_fda5f37fd992588e06a692670ec5eedfp4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_fda5f37fd992588e06a692670ec5eedfp@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_fda5f37fd992588e06a692670ec5eedfp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_fda5f37fd992588e06a692670ec5eedfp@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:109031260..109031268, +
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_fda5f37fd992588e06a692670ec5eedfp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_fda5f37fd992588e06a692670ec5eedfp@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_fda5f37fd992588e06a692670ec5eedfp@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_fda5f37fd992588e06a692670ec5eedfp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_fda5f37fd992588e06a692670ec5eedfp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_fda5f37fd992588e06a692670ec5eedfp8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113554186..113554192, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:68437375..68437378, +

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