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Revision as of 08:17, 15 June 2012

Name:anatomical cavity
Definition:"Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
Xrefs:
links:

EHDAA:2329
EHDAA:2337
EHDAA:2347
EHDAA:293
EHDAA:4741
EHDAA:48
EHDAA:638
EHDAA:644
EMAPA:16054
FMA:67552
galen:Cavity

NIF_GrossAnatomy:birnlex_1011
Synonyms: "cavity" EXACT []
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000464(anatomical space)



Children

is a:UBERON:0000167 (oral cavity),UBERON:0001707 (nasal cavity),UBERON:0001825 (paranasal sinus),UBERON:0002323 (body cavity),UBERON:0003886 (body cavity precursor),UBERON:0005606 (hyaloid cavity)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002553 (anatomical cavity), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.68e-39FFCP PHASE2:Mm9::chr2:164481543..164481613,+#_71cd0929dbeaacfa73113e6942bf3f00p1@Wfdc10
4.68e-39FFCP PHASE1:Mm9::chr2:164481543..164481613,+#_71cd0929dbeaacfa73113e6942bf3f00p1@Wfdc10
4.17e-38FFCP PHASE2:Mm9::chr16:5227918..5227923,-#_6256ffdecc184e5488008d742277bdddp@chr16:5227918..5227923, -
4.17e-38FFCP PHASE1:Mm9::chr16:5227918..5227923,-#_6256ffdecc184e5488008d742277bdddp@chr16:5227918..5227923, -
1.75e-32FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_3b9beddb0e3cf53004a0dcf6b5d2282cp7@Tulp2
1.75e-32FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_3b9beddb0e3cf53004a0dcf6b5d2282cp7@Tulp2
3.55e-32FFCP PHASE1:Mm9::chrX:130516261..130516293,-#_fd1cd17a44b5344929069e3bf3e38faep2@Sytl4
3.55e-32FFCP PHASE2:Mm9::chrX:130516261..130516293,-#_fd1cd17a44b5344929069e3bf3e38faep2@Sytl4
2.75e-29FFCP PHASE1:Mm9::chr1:157079840..157079859,-#_c3ca34ade50c330900e08f8670f9e45cp1@BC034090
2.75e-29FFCP PHASE2:Mm9::chr1:157079840..157079859,-#_c3ca34ade50c330900e08f8670f9e45cp1@BC034090
3.27e-29FFCP PHASE1:Mm9::chr2:104966659..104966672,-#_b3f98c49966ad0458119aa40f3dfc35ep1@AI314831
3.27e-29FFCP PHASE2:Mm9::chr2:104966659..104966672,-#_b3f98c49966ad0458119aa40f3dfc35ep1@AI314831
6.97e-29FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_3fb34ee0f5322e5881f22fffa7da16a8p3@Fkbp5
6.97e-29FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_3fb34ee0f5322e5881f22fffa7da16a8p3@Fkbp5
7.67e-29FFCP PHASE2:Mm9::chr2:104966545..104966586,-#_2b38f7950110c44026f55b7bf2ddbe6bp1@ENSMUST00000174870
7.67e-29FFCP PHASE1:Mm9::chr2:104966545..104966586,-#_2b38f7950110c44026f55b7bf2ddbe6bp1@ENSMUST00000174870
8.06e-29FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_dc640e61d42ace2dfb320a762597b9bbp1@Mael
8.06e-29FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_dc640e61d42ace2dfb320a762597b9bbp1@Mael
2.73e-28FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_257dc3c9fae755b66b8293c44f26cb1cp@chr5:26334211..26334241, +
2.73e-28FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_257dc3c9fae755b66b8293c44f26cb1cp@chr12:31775417..31775434, -
2.73e-28FFCP PHASE2:Mm9::chr4:141375242..141375280,-#_257dc3c9fae755b66b8293c44f26cb1cp3@Cela2a
2.73e-28FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_257dc3c9fae755b66b8293c44f26cb1cp@chr12:31775417..31775434, -
2.73e-28FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_257dc3c9fae755b66b8293c44f26cb1cp@chr5:26334211..26334241, +
2.73e-28FFCP PHASE1:Mm9::chr4:141375242..141375280,-#_257dc3c9fae755b66b8293c44f26cb1cp3@Cela2a
3.65e-28FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_1debe71c040f58ac04396b3d740dc44bp2@Slc25a31
3.65e-28FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_1debe71c040f58ac04396b3d740dc44bp2@Slc25a31
4.04e-28FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_2e937082b157767e5c862ca14106d88dp1@Asz1
4.04e-28FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_2e937082b157767e5c862ca14106d88dp1@Asz1
1.1e-27FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_6ef06a9da98c0675905c742f5dbbdbbep1@Cst12
1.1e-27FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_6ef06a9da98c0675905c742f5dbbdbbep1@Cst12
2.67e-27FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_797c69996e6f07a2d010a7656cf183c8p6@Folr1
2.67e-27FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_797c69996e6f07a2d010a7656cf183c8p6@Folr1
3.3e-27FFCP PHASE1:Mm9::chr5:109484637..109484648,+#_dd71627f4e44e2eb35c8b5431316de2bp@chr5:109484637..109484648, +
3.3e-27FFCP PHASE2:Mm9::chr5:109484637..109484648,+#_dd71627f4e44e2eb35c8b5431316de2bp@chr5:109484637..109484648, +
8.52e-27FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_5ad2489f4a74a89798757a5ba6900353p5@Gstm6
8.52e-27FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_5ad2489f4a74a89798757a5ba6900353p5@Gstm6
9.31e-27FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_e8624ed9d4f05e4a4e837c13b3ba9a1bp2@Kctd14
9.31e-27FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_e8624ed9d4f05e4a4e837c13b3ba9a1bp2@Kctd14
1.16e-26FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_2d7b463a5e5bfcfe213ba9544fb78835p1@Mov10l1
1.16e-26FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_2d7b463a5e5bfcfe213ba9544fb78835p1@Mov10l1
1.51e-26FFCP PHASE1:Mm9::chr8:4248188..4248219,+#_a8504593dc8ee3e4df361b98ede2ae66p2@Gm14378
1.51e-26FFCP PHASE2:Mm9::chr8:4248188..4248219,+#_a8504593dc8ee3e4df361b98ede2ae66p2@Gm14378
2.04e-26FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_2d1d372db9bed9c7100b76f3ea13719cp4@Fam81a
2.04e-26FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_2d1d372db9bed9c7100b76f3ea13719cp4@Fam81a
2.06e-26FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_6c4d7d25bad5db9037861af38ecaaf3ep1@Sycp1
2.06e-26FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_6c4d7d25bad5db9037861af38ecaaf3ep1@Sycp1
2.57e-26FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_4361440e81eb4657461e19c11895d027p2@Asz1
2.57e-26FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_4361440e81eb4657461e19c11895d027p2@Asz1
3.36e-26FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr6:30494986..30494997, +
3.36e-26FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr6:30494986..30494997, +
3.36e-26FFCP PHASE2:Mm9::chr18:34531496..34531499,-#_12581ee5c5eb61328ba1eac1f63f89cap@chr18:34531496..34531499, -
3.36e-26FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_12581ee5c5eb61328ba1eac1f63f89cap22@Rgs3
3.36e-26FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_12581ee5c5eb61328ba1eac1f63f89cap3@Cst9
3.36e-26FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr19:58804381..58804392, +
3.36e-26FFCP PHASE1:Mm9::chr18:34531496..34531499,-#_12581ee5c5eb61328ba1eac1f63f89cap@chr18:34531496..34531499, -
3.36e-26FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_12581ee5c5eb61328ba1eac1f63f89cap22@Rgs3
3.36e-26FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_12581ee5c5eb61328ba1eac1f63f89cap3@Cst9
3.36e-26FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_12581ee5c5eb61328ba1eac1f63f89cap@chr19:58804381..58804392, +
3.59e-26FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_f34b4dfb356862b14afe76e43786367dp@chr15:102277099..102277126, +
3.59e-26FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_f34b4dfb356862b14afe76e43786367dp@chr15:102277099..102277126, +
3.77e-26FFCP PHASE2:Mm9::chr15:76701495..76701535,-#_e2ec011817dfba6a308182823b7f406ep3@Zfp251
3.77e-26FFCP PHASE1:Mm9::chr15:76701495..76701535,-#_e2ec011817dfba6a308182823b7f406ep3@Zfp251
4.72e-26FFCP PHASE1:Mm9::chr4:129300189..129300196,-#_7556dc71d7f7c0502c12ba7f4dcf7f9bp3@Ccdc28b
4.72e-26FFCP PHASE2:Mm9::chr4:129300189..129300196,-#_7556dc71d7f7c0502c12ba7f4dcf7f9bp3@Ccdc28b
5.79e-26FFCP PHASE1:Mm9::chr10:81037444..81037483,+#_ca7ba490ab3c4effbf4e0b3f0d3062f4p5@Tle2
5.79e-26FFCP PHASE2:Mm9::chr10:81037444..81037483,+#_ca7ba490ab3c4effbf4e0b3f0d3062f4p5@Tle2
6.18e-26FFCP PHASE1:Mm9::chr11:116355895..116355908,-#_4a28e007c0666deaf2cab4ae78f31699p4@Prpsap1
6.18e-26FFCP PHASE2:Mm9::chr11:116355895..116355908,-#_4a28e007c0666deaf2cab4ae78f31699p4@Prpsap1
2.12e-25FFCP PHASE1:Mm9::chr7:52741730..52741769,+#_e924d858e2bf0b4737e8b2621b8cddc8p2@Tulp2
2.12e-25FFCP PHASE2:Mm9::chr7:52741730..52741769,+#_e924d858e2bf0b4737e8b2621b8cddc8p2@Tulp2
2.29e-25FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_58a80549b27ae8d158e7e9e3a1fea935p@chr7:149469129..149469146, +
2.29e-25FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_58a80549b27ae8d158e7e9e3a1fea935p1@Fkbp6
2.29e-25FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_58a80549b27ae8d158e7e9e3a1fea935p@chr7:149469129..149469146, +
2.29e-25FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_58a80549b27ae8d158e7e9e3a1fea935p1@Fkbp6
2.49e-25FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_73278961abd73f917847018e722e6267p1@Mir202
2.49e-25FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_73278961abd73f917847018e722e6267p1@Mir202
5.74e-25FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_e260e77841c0854499bfae757a64ae3fp1@Hormad1
5.74e-25FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_e260e77841c0854499bfae757a64ae3fp1@Hormad1
5.99e-25FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_d36df1a0c6ab4cfbdf1e0f719d468977p1@Hist1h2aa
5.99e-25FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_d36df1a0c6ab4cfbdf1e0f719d468977p1@Hist1h2aa
9.64e-25FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_58a21255bc54fd4d48d979c6213a46abp1@Piwil2
9.64e-25FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_58a21255bc54fd4d48d979c6213a46abp1@Piwil2
1.08e-24FFCP PHASE2:Mm9::chr2:38570011..38570034,-#_0c310564442ee0a415b4bc9f24bc2fddp1@Nr5a1
1.08e-24FFCP PHASE1:Mm9::chr2:38570011..38570034,-#_0c310564442ee0a415b4bc9f24bc2fddp1@Nr5a1
1.15e-24FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_7b171c8304bab57dd17d1828056c421ap1@Tex12
1.15e-24FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_7b171c8304bab57dd17d1828056c421ap1@Tex12
1.31e-24FFCP PHASE1:Mm9::chr10:81060346..81060374,-#_d3eb7aca4102dcb65dbac614455b2f65p1@Tle6
1.31e-24FFCP PHASE2:Mm9::chr10:81060346..81060374,-#_d3eb7aca4102dcb65dbac614455b2f65p1@Tle6
1.43e-24FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_9a9fb4c5f024ee24f5602351db27c94bp1@Gm949
1.43e-24FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_9a9fb4c5f024ee24f5602351db27c94bp1@Gm949
1.71e-24FFCP PHASE1:Mm9::chr2:104966713..104966727,-#_079bb6d708dd9b6f1deaadb9a4b78507p2@AI314831
1.71e-24FFCP PHASE2:Mm9::chr2:104966713..104966727,-#_079bb6d708dd9b6f1deaadb9a4b78507p2@AI314831
2.05e-24FFCP PHASE2:Mm9::chr2:104966510..104966538,-#_8a280f7fc7d80c1dbb3f033bf28cbe1fp2@ENSMUST00000174870
2.05e-24FFCP PHASE1:Mm9::chr2:104966510..104966538,-#_8a280f7fc7d80c1dbb3f033bf28cbe1fp2@ENSMUST00000174870
2.36e-24FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_0323607ea6ac5c5d1b19490bdd37f8dcp1@Exoc3l2
2.36e-24FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_0323607ea6ac5c5d1b19490bdd37f8dcp1@Exoc3l2
2.73e-24FFCP PHASE1:Mm9::chr6:125236033..125236068,-#_57824e3168e128cadf5cf70f41404e80p1@Tuba3a, p2@Tuba3b
2.73e-24FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_57824e3168e128cadf5cf70f41404e80p1@Fam178b
2.73e-24FFCP PHASE1:Mm9::chr6:145564529..145564546,+#_57824e3168e128cadf5cf70f41404e80p1@Tuba3b
2.73e-24FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_57824e3168e128cadf5cf70f41404e80p1@Fam178b