UBERON:0002784
From FANTOM5_SSTAR
| Name: | regional part of diencephalon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
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| Synonyms: |
"anatomical structure of brain of between brain" EXACT [OBOL:automatic] "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic] "anatomical structure of brain of interbrain" EXACT [OBOL:automatic] "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic] "between brain anatomical structure of brain" EXACT [OBOL:automatic] "between brain biological structure of brain" EXACT [OBOL:automatic] "between brain brain anatomical structure" EXACT [OBOL:automatic] "between brain brain biological structure" EXACT [OBOL:automatic] "between brain neuraxis segment" EXACT [OBOL:automatic] "between brain regional part of brain" EXACT [OBOL:automatic] "between brain segment of brain" EXACT [OBOL:automatic] "biological structure of brain of between brain" EXACT [OBOL:automatic] "biological structure of brain of diencephalon" EXACT [OBOL:automatic] "biological structure of brain of interbrain" EXACT [OBOL:automatic] "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic] "brain anatomical structure of between brain" EXACT [OBOL:automatic] "brain anatomical structure of diencephalon" EXACT [OBOL:automatic] "brain anatomical structure of interbrain" EXACT [OBOL:automatic] "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic] "brain biological structure of between brain" EXACT [OBOL:automatic] "brain biological structure of diencephalon" EXACT [OBOL:automatic] "brain biological structure of interbrain" EXACT [OBOL:automatic] "brain biological structure of mature diencephalon" EXACT [OBOL:automatic] "diencephalon anatomical structure of brain" EXACT [OBOL:automatic] "diencephalon biological structure of brain" EXACT [OBOL:automatic] "diencephalon brain anatomical structure" EXACT [OBOL:automatic] "diencephalon brain biological structure" EXACT [OBOL:automatic] "diencephalon neuraxis segment" EXACT [OBOL:automatic] "diencephalon regional part of brain" EXACT [OBOL:automatic] "diencephalon segment" EXACT [FMA:62005] "diencephalon segment of brain" EXACT [OBOL:automatic] "interbrain anatomical structure of brain" EXACT [OBOL:automatic] "interbrain biological structure of brain" EXACT [OBOL:automatic] "interbrain brain anatomical structure" EXACT [OBOL:automatic] "interbrain brain biological structure" EXACT [OBOL:automatic] "interbrain neuraxis segment" EXACT [OBOL:automatic] "interbrain regional part of brain" EXACT [OBOL:automatic] "interbrain segment of brain" EXACT [OBOL:automatic] "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic] "mature diencephalon biological structure of brain" EXACT [OBOL:automatic] "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic] "mature diencephalon brain biological structure" EXACT [OBOL:automatic] "mature diencephalon neuraxis segment" EXACT [OBOL:automatic] "mature diencephalon regional part of brain" EXACT [OBOL:automatic] "mature diencephalon segment of brain" EXACT [OBOL:automatic] "neuraxis segment of between brain" EXACT [OBOL:automatic] "neuraxis segment of diencephalon" EXACT [OBOL:automatic] "neuraxis segment of interbrain" EXACT [OBOL:automatic] "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic] "regional part of brain of between brain" EXACT [OBOL:automatic] "regional part of brain of diencephalon" EXACT [OBOL:automatic] "regional part of brain of interbrain" EXACT [OBOL:automatic] "regional part of brain of mature diencephalon" EXACT [OBOL:automatic] "segment of brain of between brain" EXACT [OBOL:automatic] "segment of brain of diencephalon" EXACT [OBOL:automatic] "segment of brain of interbrain" EXACT [OBOL:automatic] "segment of brain of mature diencephalon" EXACT [OBOL:automatic] "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002780(regional part of forebrain) |
|---|---|
| part_of: | UBERON:0001894(diencephalon) |
Children
| is a: | UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10154-103A1 (thalamus, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.76e-110 | FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6 | p@chr15:75122737..75122741, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6 | p@chr15:75122737..75122741, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:60826120..60826127, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473472..135473477, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_d4b612b81135e7d6f100ad68e256a789 | p5@AANAT |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:99860753..99860764, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_d4b612b81135e7d6f100ad68e256a789 | p10@PRR16 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:56628548..56628553, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr18:56963107..56963117, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18041244..18041266, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_d4b612b81135e7d6f100ad68e256a789 | p32@DMD |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18067904..18067908, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18067904..18067908, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17185712..17185735, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135515957..135515964, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_d4b612b81135e7d6f100ad68e256a789 | p11@SRRM3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:45782001..45782009, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr18:56963093..56963105, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_d4b612b81135e7d6f100ad68e256a789 | p10@CNGB3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_d4b612b81135e7d6f100ad68e256a789 | p28@KCNIP4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:52650486..52650491, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135504314..135504320, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:18066345..18066365, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:18580269..18580290,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr10:18580269..18580290, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr15:55470964..55470974, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_d4b612b81135e7d6f100ad68e256a789 | p1@BC014398 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17075761..17075773,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17075761..17075773, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135499228..135499260, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:135732714..135732721,-#_d4b612b81135e7d6f100ad68e256a789 | p2@ENST00000514282 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr9:92310419..92310432, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:56628548..56628553, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473983..135473986, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr5:7338484..7338504, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:15134610..15134617, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_d4b612b81135e7d6f100ad68e256a789 | p4@ENST00000439998 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9782665..9782674, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:108616342..108616384, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:50898098..50898107, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_d4b612b81135e7d6f100ad68e256a789 | p8@CAMKMT |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:56582028..56582062,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:56582028..56582062, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9194488..9194491, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473876..135473885, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:52650486..52650491, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_d4b612b81135e7d6f100ad68e256a789 | p3@NEUROG1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_d4b612b81135e7d6f100ad68e256a789 | p3@WNT16 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:55470964..55470974,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr15:55470964..55470974, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:18036005..18036011, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18040537..18040547, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:72297717..72297725, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:99798419..99798422,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:99798419..99798422, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135521466..135521470, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr15:47662877..47662880, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:50898098..50898107, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_d4b612b81135e7d6f100ad68e256a789 | p35@DMD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:128170725..128170735,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:128170725..128170735, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:51175701..51175708,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:51175701..51175708, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135515957..135515964, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_d4b612b81135e7d6f100ad68e256a789 | p11@SRRM3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_d4b612b81135e7d6f100ad68e256a789 | p10@CNGB3 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:13820103..13820109, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135504337..135504342, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9194488..9194491,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9194488..9194491, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr17:55484129..55484139, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135499228..135499260, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:18036005..18036011, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_d4b612b81135e7d6f100ad68e256a789 | p9@PRR16 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr9:92310419..92310432, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:57975398..57975401, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:129084265..129084288, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:57914395..57914398, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_d4b612b81135e7d6f100ad68e256a789 | p4@ENST00000439998 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr6:33087873..33087886, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:55422858..55422866, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_d4b612b81135e7d6f100ad68e256a789 | p6@FRMPD1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:6956383..6956390,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:6956383..6956390, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:54952420..54952425,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:54952420..54952425, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473876..135473885, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_d4b612b81135e7d6f100ad68e256a789 | p8@SLC5A7 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:192894664..192894677,-#_d4b612b81135e7d6f100ad68e256a789 | p1@ENST00000414895 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:72297712..72297715, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:68306577..68306607,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:68306577..68306607, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:51808960..51808964,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:51808960..51808964, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr6:13009334..13009341, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55422293..55422300,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:55422293..55422300, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9186866..9186885, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17065916..17065929, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18041244..18041266, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:100942376..100942381, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:99860786..99860791, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:107545606..107545631, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135521466..135521470, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_d4b612b81135e7d6f100ad68e256a789 | p35@DMD |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18067951..18067954, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:204620238..204620253,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:204620238..204620253, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:25264978..25265001,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr9:25264978..25265001, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:54952412..54952416, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18067951..18067954, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17185958..17185998,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17185958..17185998, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135515989..135515991, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr17:55484129..55484139, + |
