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UBERON:0003080

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Name:anterior neural tube
Namespace:FANTOM
Xrefs:
links:

AAO:0011012
TAO:0007038
VHOG:0001384
XAO:0000307

ZFA:0007038
Comments:editor note: TODO - add grouping class for the anterior end of the neural tube at all stages
Alt_id: UBERON:XAO_0000307-ZFA_0007038

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003056(pre-chordal neural plate)
part_of:UBERON:0000922(embryo),UBERON:0001049(neural tube)



Children

develops from:UBERON:0001890 (forebrain),UBERON:0009616 (presumptive midbrain)
part of:UBERON:0010286 (midbrain neural tube)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003080 (anterior neural tube), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_e2649dc7762f54427ba5df30ccaf35e0p@chr5:89977201..89977236, +
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_e2649dc7762f54427ba5df30ccaf35e0p@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_774fbaef1efae2728dcf0876dca6354fp5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_774fbaef1efae2728dcf0876dca6354fp5@ST8SIA3
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_9344089f23497000b447e7c400352308p5@PHACTR1
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_9344089f23497000b447e7c400352308p5@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_b546dadf3e2e05d4842c102f2dc8324ap3@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_b546dadf3e2e05d4842c102f2dc8324ap3@PHACTR1
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_228839b54907fe78ee65b8d036f93287p6@PSD
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_228839b54907fe78ee65b8d036f93287p6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_5c4bba0c810765174b2520b9944cd514p@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_5c4bba0c810765174b2520b9944cd514p@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_48410c44bdfa3dc22af6c8b539657079p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_48410c44bdfa3dc22af6c8b539657079p2@FXYD7
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1b77d3db036407389b6dddf7d4712b18p1@NR2E1
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1b77d3db036407389b6dddf7d4712b18p1@NR2E1
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_76a2361153a5dc31c44c26b7b7441035p5@OPCML
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_76a2361153a5dc31c44c26b7b7441035p5@OPCML
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_a7e7e8595e8794a39fcb0a995b63cf1ep4@DPP6
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_a7e7e8595e8794a39fcb0a995b63cf1ep4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_cb197bd74462a1557abe05d56a103db7p9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_cb197bd74462a1557abe05d56a103db7p9@GPM6B
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c9118e711f4cb6c477db69b69e8213cfp@chr4:6514469..6514483, -
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c9118e711f4cb6c477db69b69e8213cfp@chr4:6514469..6514483, -
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_abdd473b819d667a4e5160f2b810338cp3@GRIN2B
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_abdd473b819d667a4e5160f2b810338cp3@GRIN2B
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_4dec82bfe2dba7f39d24d607c56df46dp4@PHACTR1
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_4dec82bfe2dba7f39d24d607c56df46dp4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_cdf4db3105e7f0da57854a98f888da3ep8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_cdf4db3105e7f0da57854a98f888da3ep8@RIMS2
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_156ef020ae889ed8efffa9f41a10bcdap8@LRRC7
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_156ef020ae889ed8efffa9f41a10bcdap8@LRRC7
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_9b434ddc0ba98e5d60b82474de71561ap4@DLGAP3
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_9b434ddc0ba98e5d60b82474de71561ap4@DLGAP3
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_33260ed272125080623f068e86c40601p8@PHACTR1
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_33260ed272125080623f068e86c40601p8@PHACTR1
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_08b3e530347ee531a198b2063709b092p3@DOCK4
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_08b3e530347ee531a198b2063709b092p3@DOCK4
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_c18c6b431ae38ec9353efd2748897b17p3@GPR98
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_c18c6b431ae38ec9353efd2748897b17p3@GPR98
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_89e66c4b017899357b3f9061e67015e1p2@DLGAP3
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_89e66c4b017899357b3f9061e67015e1p2@DLGAP3
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_eabd0b815fed076dba45710c9636254cp5@MKL2
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_eabd0b815fed076dba45710c9636254cp5@MKL2
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_e5d88532239cc2e9f6454bada316d90cp1@uc003ppd.1
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_e5d88532239cc2e9f6454bada316d90cp1@uc003ppd.1
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_46e7094214646fda7663fc1dd21c1a22p@chr1:70035018..70035044, +
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_46e7094214646fda7663fc1dd21c1a22p@chr1:70035018..70035044, +
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_241a8de06712fa99e387500d2db10792p6@GABRA2
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_241a8de06712fa99e387500d2db10792p6@GABRA2
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_69d6097fb8c5d1f88bf86e526b93eb2bp6@CIT
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_69d6097fb8c5d1f88bf86e526b93eb2bp6@CIT
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_8ee78d2c39266f29cfc9b52bd1eb6f2fp2@LMTK3
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_8ee78d2c39266f29cfc9b52bd1eb6f2fp2@LMTK3
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_b2df44b0a49859bb0e5ae6f6295cbcf8p10@GPM6B
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_b2df44b0a49859bb0e5ae6f6295cbcf8p10@GPM6B
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_85d086a568a8d2ba3f24c3f714d75cc6p@chr5:80255907..80255942, +
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_85d086a568a8d2ba3f24c3f714d75cc6p@chr5:80255907..80255942, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_d5c284d900dd5193b37fe3838c4e9a1bp@chr17:61194578..61194599, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_d5c284d900dd5193b37fe3838c4e9a1bp@chr17:61194578..61194599, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_8f40b91e5840ef8d33a10e65ad440195p@chr5:89977181..89977199, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_8f40b91e5840ef8d33a10e65ad440195p@chr5:89977181..89977199, +
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_10c324b8c54ad1bc2b6eb590bb71427ap1@ENST00000417881
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_10c324b8c54ad1bc2b6eb590bb71427ap1@ENST00000417881
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_c1376d3e542867c540c52824e5814d88p6@DPP6
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_c1376d3e542867c540c52824e5814d88p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_3ee37acdba17066aad7cf504f82cb8dep2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_3ee37acdba17066aad7cf504f82cb8dep2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_d574f366e8057463dbd17666615ffd3bp@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_d574f366e8057463dbd17666615ffd3bp@chr2:3134361..3134374, -
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_0e4dd3d2fdd198e6223e02cd8c237502p3@TIAM2
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_0e4dd3d2fdd198e6223e02cd8c237502p3@TIAM2
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_10aaae381c30c70bf9bc817207f223b0p1@KALRN
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_10aaae381c30c70bf9bc817207f223b0p1@KALRN
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_7811d7c9931e5fbe45de0f9510d928e6p4@ASTN1
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_7811d7c9931e5fbe45de0f9510d928e6p4@ASTN1
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_6c10a94ca7ef7b1b6b5f391111406776p@chr11:132982177..132982181, -
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_6c10a94ca7ef7b1b6b5f391111406776p@chr11:132982177..132982181, -
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_150f36583c5cf3628bb96333907bedeep5@NKAIN3
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_150f36583c5cf3628bb96333907bedeep5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_cf926b3d3779fc5bedc49ade3c715261p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_cf926b3d3779fc5bedc49ade3c715261p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_369bb896aa15d03d33c7e7ee293f341ep3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_369bb896aa15d03d33c7e7ee293f341ep3@ARNT2
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_f6b96438edaa336aa0cbee1ee477f80d-, p@chr20:1791316..1791339
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_f6b96438edaa336aa0cbee1ee477f80dp@chr20:1791316..1791339, -
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_a39114d09c4ca310230e6febb2a9bbe5p14@PALM2-AKAP2
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_a39114d09c4ca310230e6febb2a9bbe5p14@PALM2-AKAP2
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_164087392f97c15f7c16a495f9ded22dp6@GPM6B
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_164087392f97c15f7c16a495f9ded22dp6@GPM6B
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_433c9ce21cc8623d9511e94e2533218fp1@ENST00000412957
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_433c9ce21cc8623d9511e94e2533218fp1@ENST00000412957
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_92393551592767ac179e363e3f2b01a6p7@ANKS1B
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_92393551592767ac179e363e3f2b01a6p7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_afedbe1cb0a143dd1a7b0eb58f183efep@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_afedbe1cb0a143dd1a7b0eb58f183efep@chr20:1791288..1791304, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_bd4f3a986eacd3e29cac52c0fa1f1da2p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_bd4f3a986eacd3e29cac52c0fa1f1da2p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_fd650a941d37fbda358a2051e2a9f86fp2@TIAM2
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_fd650a941d37fbda358a2051e2a9f86fp2@TIAM2