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UBERON:0003082

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Name:myotome
Namespace:FANTOM
Definition:"A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
Xrefs:
links:

AAO:0011067
BTO:0000742
EHDAA2:0003431
EHDAA:1721
EHDAA:1727
EHDAA:1733
EHDAA:1739
[ Gray65.png Gray65.png]
[ 200px-Gray65.png 200px-Gray65.png]
ncithesaurus:Myotome_Region
SCTID:344535001
TAO:0001056
VHOG:0001244
XAO:0000315

ZFA:0001056
Synonyms: "muscle plate" RELATED []
"myomere" RELATED []
"myotome region" RELATED []
"myotomes" RELATED []
"myotomus" RELATED LATIN [Wikipedia:Myotome]
Comments:Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
Alt_id: UBERON:XAO_0000315-ZFA_0001056
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0017650(developing mesenchymal structure)
develops_from:UBERON:0002329(somite),UBERON:0004290(dermomyotome)
part_of:UBERON:0000926(mesoderm)



Children

develops from:UBERON:0001134 (skeletal muscle tissue),UBERON:0014892 (skeletal muscle organ)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003082 (myotome), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_5ac7572c11ad44c61528e3c572da8069p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_5ac7572c11ad44c61528e3c572da8069p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_83276f31878937af0080c58edf614dd1p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_83276f31878937af0080c58edf614dd1p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_83276f31878937af0080c58edf614dd1p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_83276f31878937af0080c58edf614dd1p@chrX:65748600..65748616, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_76c54a07e70b9bb07f6f91e9a468a57cp@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_76c54a07e70b9bb07f6f91e9a468a57cp@chrX:160838787..160838800, +
3.13e-47FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_a2b09cb7be43c3153d7d1cec91bf321dp@chr6:53359400..53359406, +
3.13e-47FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_a2b09cb7be43c3153d7d1cec91bf321d+, p@chr6:53359400..53359406
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_6f13d30de0b64929e29f0e60df4b9ed5p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_6f13d30de0b64929e29f0e60df4b9ed5p@chr11:81849982..81850000, +
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_dae9e184c2f3f4a0d93279af2a48a0b1p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_dae9e184c2f3f4a0d93279af2a48a0b1p@chr17:14813242..14813246, -
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_0e711495a509634abe85b352a79f919dp4@Gpr39
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_0e711495a509634abe85b352a79f919dp4@Gpr39
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160823859..160823870, +
4.61e-38FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d46de67acb716ea8a1852a3cbe189d3fp2@LRRC17
4.61e-38FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d46de67acb716ea8a1852a3cbe189d3fp2@LRRC17
6.16e-37FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_b8c7bc4f6decd68ee8a92a1d86cc40abp8@ARHGAP22
6.16e-37FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_b8c7bc4f6decd68ee8a92a1d86cc40abp8@ARHGAP22
7.01e-37FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_2bf6174c36957193330fd8d695001380p@chr9:35685631..35685657, +
7.01e-37FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_2bf6174c36957193330fd8d695001380p@chr9:35685631..35685657, +
9.63e-36FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_a8ef848b6bdefa1115d9315a44989d3ep4@ARHGAP22
9.63e-36FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_a8ef848b6bdefa1115d9315a44989d3ep4@ARHGAP22
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_b9998957088f1195fcda5a6c0f3c64d4p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_b9998957088f1195fcda5a6c0f3c64d4p11@Fam198b
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_1b62081ce288e890329a35962808d490p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_1b62081ce288e890329a35962808d490p@chr1:127574253..127574264, +
4.0e-35FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_61f4665f10b3df9f0dd06ddc6b4a6c0ap1@LRRC17
4.0e-35FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_61f4665f10b3df9f0dd06ddc6b4a6c0ap1@LRRC17
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_c366c7a15a1841dd72aaa1e520bd0f4bp7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_c366c7a15a1841dd72aaa1e520bd0f4bp7@Gpr39
5.48e-35FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_0324235d0b34af946467945dd709ae16p@chr11:102661517..102661541, -
5.48e-35FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_0324235d0b34af946467945dd709ae16p@chr11:102661517..102661541, -
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_1e02528f31265f61a7262208083abf1dp11@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_1e02528f31265f61a7262208083abf1dp11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1309b4e144c3eaee438e56ce4f88c044p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1309b4e144c3eaee438e56ce4f88c044p@chrX:160839768..160839780, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_1e5efe0a05dcddc5a37fc93146e5a713p8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_1e5efe0a05dcddc5a37fc93146e5a713p8@Gpr39
1.83e-34FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_a448df1c429e1aa6f038c2222e8cd5b0p@chr4:74703497..74703511, +
1.83e-34FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_a448df1c429e1aa6f038c2222e8cd5b0p@chr4:74703497..74703511, +
5.92e-34FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_4c07fd1f53045ae8781a2869ad514d0ep@chr4:7846444..7846449, -
5.92e-34FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_4c07fd1f53045ae8781a2869ad514d0ep@chr4:7846444..7846449, -
2.08e-33FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_2103fb890bd8019005f8024ac6d28ad1p3@LRRC17
2.08e-33FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_2103fb890bd8019005f8024ac6d28ad1p3@LRRC17
1.42e-32FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_0d22e733b7dfb1032cde250e327b04dep2@CXCL6
1.42e-32FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_0d22e733b7dfb1032cde250e327b04dep2@CXCL6
1.85e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_94e92dafb57850f35e67023c0bf4beb6p@chr9:35689148..35689192, +
1.85e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_94e92dafb57850f35e67023c0bf4beb6p@chr9:35689148..35689192, +
2.15e-32FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_6f0cabb5a7741cdfcf9ff59a9774f281p2@SASH1
2.15e-32FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_6f0cabb5a7741cdfcf9ff59a9774f281p2@SASH1
2.89e-32FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_83717d6cc1ba527c7b2e563d9fdedde9p@chr4:169059590..169059615, +
2.89e-32FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_83717d6cc1ba527c7b2e563d9fdedde9p@chr4:169059590..169059615, +
3.77e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_fba4dc20f1bc7d43267e3b43dfbe4f29p@chr2:134548872..134548879, -
3.77e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_fba4dc20f1bc7d43267e3b43dfbe4f29p@chr2:134548872..134548879, -
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_d30a7668e210d36e2ef2bf03dbd8f392p@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_d30a7668e210d36e2ef2bf03dbd8f392p@chr7:96658543..96658553, -
4.14e-32FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_236842f16af25a40054725ab01830a01p3@IFI27L2
4.14e-32FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_236842f16af25a40054725ab01830a01p3@IFI27L2
4.65e-32FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_93811635469677730388e03e9537fcf0p@chr9:35684475..35684520, +
4.65e-32FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_93811635469677730388e03e9537fcf0p@chr9:35684475..35684520, +
8.06e-32FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_e0133101a2c7bc91c487f490abe7a5a5p1@CU675118
8.06e-32FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_e0133101a2c7bc91c487f490abe7a5a5p1@CU675118
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_b3cf9bce2d2235ca5ff8943ea021f585p2@Il6
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_b3cf9bce2d2235ca5ff8943ea021f585p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_b3cf9bce2d2235ca5ff8943ea021f585p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_b3cf9bce2d2235ca5ff8943ea021f585p2@Il6
1.52e-31FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_cf4489f917d25ee42c9e5760a0672d2fp@chr9:35685445..35685517, +
1.52e-31FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_cf4489f917d25ee42c9e5760a0672d2fp@chr9:35685445..35685517, +
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_24aad1e301da76ca90ad94ecc0548e48p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_24aad1e301da76ca90ad94ecc0548e48p@chr10:67598037..67598049, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_04176113e3ece751382188375a9c2707p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_04176113e3ece751382188375a9c2707p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_29c2fac7dec525cc7f4e5b5e9c114afep@chr18:52678391..52678395, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_29c2fac7dec525cc7f4e5b5e9c114afep@chr18:52678391..52678395, -
3.27e-31FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_3703ae85a6f35a5d580ee5b0407c9d24p2@PAPPA
3.27e-31FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_3703ae85a6f35a5d580ee5b0407c9d24p2@PAPPA
4.08e-31FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_c2fb5e73d3b72f4c068f41e7c2f04494p3@CXCL6
4.08e-31FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_c2fb5e73d3b72f4c068f41e7c2f04494p3@CXCL6
6.01e-31FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_2d0c04978c1b222151ac8b4d36de9b25p2@RCN3
6.01e-31FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_2d0c04978c1b222151ac8b4d36de9b25p2@RCN3
7.63e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_5054f358c7661f55ff1cd8cb1b039e0bp2@ELTD1
7.63e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_5054f358c7661f55ff1cd8cb1b039e0bp2@ELTD1
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_30af228404904f821ea12e21e8e6d48fp@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_30af228404904f821ea12e21e8e6d48fp@chr6:91222095..91222107, +
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_d1ceb95cff5757fcdf7b18707c07374bp9@Kctd10
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_d1ceb95cff5757fcdf7b18707c07374bp9@Kctd10
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_de4b1d0d56b6d235daf3945b815297e3p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_de4b1d0d56b6d235daf3945b815297e3p6@Gpr39
1.35e-30FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_f9ebd1d108bf7585e4544a645083ac13p@chr4:74703963..74703975, +
1.35e-30FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_f9ebd1d108bf7585e4544a645083ac13p@chr4:74703963..74703975, +
4.78e-30FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_2c2bb2b4419217d7acdc102e6ff74137p1@BDKRB1
4.78e-30FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_2c2bb2b4419217d7acdc102e6ff74137p1@BDKRB1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.