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UBERON:0003129

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Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_40d70c2e6c9363196e5764093c9b0a2ep7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_40d70c2e6c9363196e5764093c9b0a2ep5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_40d70c2e6c9363196e5764093c9b0a2ep41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_40d70c2e6c9363196e5764093c9b0a2ep9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_40d70c2e6c9363196e5764093c9b0a2ep9@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2ep4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:28035962..28035983, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_40d70c2e6c9363196e5764093c9b0a2ep15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_40d70c2e6c9363196e5764093c9b0a2ep3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_40d70c2e6c9363196e5764093c9b0a2ep11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_40d70c2e6c9363196e5764093c9b0a2ep5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2ep2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_40d70c2e6c9363196e5764093c9b0a2ep4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Otof
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:94180607..94180619, -

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