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UBERON:0003704

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Name:intrahepatic bile duct
Namespace:FANTOM
Definition:"the passages within the liver for the conveyance of bile." [MP:0009497]
Xrefs:
links:

FMA:15766
GAID:287
MA:0001630
MESH:A.03.159.183.158
ncithesaurus:Intrahepatic_Bile_Duct
SCTID:362193005
TAO:0005169

ZFA:0005169
Synonyms: "bile duct intrahepatic part" EXACT [MA:0001630]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002394(bile duct)
part_of:UBERON:0002107(liver)



Children

is a:UBERON:0001282 (intralobular bile duct)
part of:UBERON:0004823 (intrahepatic bile duct epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003704 (intrahepatic bile duct), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr11:77795673..77795689,-#_5f3f84df9db817477685d6228117ad78p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr2:234545437..234545446,+#_5f3f84df9db817477685d6228117ad78p4@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr2:234545407..234545408,+#_5f3f84df9db817477685d6228117ad78p9@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr13:88008760..88008795,+#_5f3f84df9db817477685d6228117ad78p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE2:Hg19::chr1:207059144..207059147,+#_5f3f84df9db817477685d6228117ad78p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE2:Hg19::chr2:234545708..234545716,+#_5f3f84df9db817477685d6228117ad78p5@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr18:1101041..1101044,+#_5f3f84df9db817477685d6228117ad78p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545437..234545446,+#_5f3f84df9db817477685d6228117ad78p4@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr13:88008760..88008795,+#_5f3f84df9db817477685d6228117ad78p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE2:Hg19::chr21:45826350..45826387,+#_5f3f84df9db817477685d6228117ad78p22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr21:45826350..45826387,+#_5f3f84df9db817477685d6228117ad78p22@TRPM2
5.42e-195FFCP PHASE2:Hg19::chr11:77795673..77795689,-#_5f3f84df9db817477685d6228117ad78p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr4:166513744..166513789,+#_5f3f84df9db817477685d6228117ad78p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545708..234545716,+#_5f3f84df9db817477685d6228117ad78p5@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr4:166513744..166513789,+#_5f3f84df9db817477685d6228117ad78p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE1:Hg19::chr1:207059144..207059147,+#_5f3f84df9db817477685d6228117ad78p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE2:Hg19::chr2:234545407..234545408,+#_5f3f84df9db817477685d6228117ad78p9@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr18:1101041..1101044,+#_5f3f84df9db817477685d6228117ad78p@chr18:1101041..1101044, +
9.37e-99FFCP PHASE1:Hg19::chr11:73874637..73874639,+#_f193972bbb65bd97331ba8abfdd14acbp@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr6:32522832..32522842,-#_f193972bbb65bd97331ba8abfdd14acbp@chr6:32522832..32522842, -
9.37e-99FFCP PHASE2:Hg19::chr2:158155402..158155409,-#_f193972bbb65bd97331ba8abfdd14acbp3@ENST00000410472
9.37e-99FFCP PHASE2:Hg19::chr6:32522832..32522842,-#_f193972bbb65bd97331ba8abfdd14acbp@chr6:32522832..32522842, -
9.37e-99FFCP PHASE2:Hg19::chr5:52786654..52786665,-#_f193972bbb65bd97331ba8abfdd14acbp@chr5:52786654..52786665, -
9.37e-99FFCP PHASE1:Hg19::chr2:158155402..158155409,-#_f193972bbb65bd97331ba8abfdd14acbp3@ENST00000410472
9.37e-99FFCP PHASE2:Hg19::chr13:98605781..98605792,+#_f193972bbb65bd97331ba8abfdd14acbp34@IPO5
9.37e-99FFCP PHASE1:Hg19::chr13:98605781..98605792,+#_f193972bbb65bd97331ba8abfdd14acbp34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr11:73874637..73874639,+#_f193972bbb65bd97331ba8abfdd14acbp@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr5:52786654..52786665,-#_f193972bbb65bd97331ba8abfdd14acbp@chr5:52786654..52786665, -
2.55e-98FFCP PHASE1:Hg19::chr2:158005569..158005571,-#_3a3852674066ad035c6857506a88baaep@chr2:158005569..158005571, -
2.55e-98FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_3a3852674066ad035c6857506a88baaep3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chr9:26936427..26936432,-#_3a3852674066ad035c6857506a88baaep@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_3a3852674066ad035c6857506a88baaep3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chr11:7904519..7904534,-#_3a3852674066ad035c6857506a88baaep1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE2:Hg19::chr9:26936427..26936432,-#_3a3852674066ad035c6857506a88baae-, p@chr9:26936427..26936432
2.55e-98FFCP PHASE2:Hg19::chr2:158005569..158005571,-#_3a3852674066ad035c6857506a88baaep@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr11:7904519..7904534,-#_3a3852674066ad035c6857506a88baaep1@ENST00000529488, p1@ENST00000533634
1.23e-66FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_f690f83f672dc35bb5466b9a99955ce9p14@SCG5
1.23e-66FFCP PHASE1:Hg19::chr4:33469231..33469240,+#_f690f83f672dc35bb5466b9a99955ce9p@chr4:33469231..33469240, +
1.23e-66FFCP PHASE2:Hg19::chr4:33469231..33469240,+#_f690f83f672dc35bb5466b9a99955ce9p@chr4:33469231..33469240, +
1.23e-66FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_f690f83f672dc35bb5466b9a99955ce9p9@ROS1
1.23e-66FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_f690f83f672dc35bb5466b9a99955ce9p14@SCG5
1.23e-66FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_f690f83f672dc35bb5466b9a99955ce9p3@UGT1A10
1.23e-66FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_f690f83f672dc35bb5466b9a99955ce9p9@ROS1
1.23e-66FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_f690f83f672dc35bb5466b9a99955ce9p3@UGT1A10
2.39e-66FFCP PHASE1:Hg19::chr4:33469257..33469268,+#_4a2256a3c3b441decb6c33b48e82a305p@chr4:33469257..33469268, +
2.39e-66FFCP PHASE2:Hg19::chr4:33469257..33469268,+#_4a2256a3c3b441decb6c33b48e82a305p@chr4:33469257..33469268, +
4.66e-66FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_20183149fb691be78de7d874338bafe9p@chr22:49769903..49769910, +
4.66e-66FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_20183149fb691be78de7d874338bafe9p@chr22:49769903..49769910, +
1.46e-50FFCP PHASE2:Hg19::chr6:32522809..32522827,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:32522809..32522827, -
1.46e-50FFCP PHASE2:Hg19::chr3:106556772..106556810,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr3:106556772..106556810, -
1.46e-50FFCP PHASE1:Hg19::chr6:72255927..72255937,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:72255927..72255937, +
1.46e-50FFCP PHASE2:Hg19::chr18:514455..514467,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr18:514455..514467, +
1.46e-50FFCP PHASE2:Hg19::chr6:72255927..72255937,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:72255927..72255937, +
1.46e-50FFCP PHASE1:Hg19::chr18:514455..514467,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr18:514455..514467, +
1.46e-50FFCP PHASE1:Hg19::chr6:32522809..32522827,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:32522809..32522827, -
1.46e-50FFCP PHASE1:Hg19::chr3:106556772..106556810,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr3:106556772..106556810, -
2.42e-50FFCP PHASE2:Hg19::chr2:187867941..187867952,+#_8dee6300c577ea5b040c52ba583fb7a0p1@ENST00000453517
2.42e-50FFCP PHASE2:Hg19::chr4:5526611..5526614,-#_8dee6300c577ea5b040c52ba583fb7a0-, p@chr4:5526611..5526614
2.42e-50FFCP PHASE2:Hg19::chr11:77794459..77794475,+#_8dee6300c577ea5b040c52ba583fb7a0p@chr11:77794459..77794475, +
2.42e-50FFCP PHASE1:Hg19::chr4:5526611..5526614,-#_8dee6300c577ea5b040c52ba583fb7a0p@chr4:5526611..5526614, -
2.42e-50FFCP PHASE1:Hg19::chr11:77794459..77794475,+#_8dee6300c577ea5b040c52ba583fb7a0p@chr11:77794459..77794475, +
2.42e-50FFCP PHASE1:Hg19::chr2:187867941..187867952,+#_8dee6300c577ea5b040c52ba583fb7a0p1@ENST00000453517
3.99e-50FFCP PHASE2:Hg19::chr21:29774431..29774441,-#_35bccda86283f6ff85226dca72f64b23p@chr21:29774431..29774441, -
3.99e-50FFCP PHASE2:Hg19::chr22:49769966..49769971,+#_35bccda86283f6ff85226dca72f64b23p@chr22:49769966..49769971, +
3.99e-50FFCP PHASE1:Hg19::chr20:50479417..50479427,-#_35bccda86283f6ff85226dca72f64b23p2@ENST00000438154
3.99e-50FFCP PHASE2:Hg19::chr21:10597500..10597509,-#_35bccda86283f6ff85226dca72f64b23p2@uc011abv.1
3.99e-50FFCP PHASE2:Hg19::chr20:50479417..50479427,-#_35bccda86283f6ff85226dca72f64b23p2@ENST00000438154
3.99e-50FFCP PHASE1:Hg19::chr21:29774431..29774441,-#_35bccda86283f6ff85226dca72f64b23p@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr11:77792240..77792241,+#_35bccda86283f6ff85226dca72f64b23p@chr11:77792240..77792241, +
3.99e-50FFCP PHASE1:Hg19::chr22:49769966..49769971,+#_35bccda86283f6ff85226dca72f64b23p@chr22:49769966..49769971, +
3.99e-50FFCP PHASE1:Hg19::chr21:10597500..10597509,-#_35bccda86283f6ff85226dca72f64b23p2@uc011abv.1
3.99e-50FFCP PHASE2:Hg19::chr11:77792240..77792241,+#_35bccda86283f6ff85226dca72f64b23p@chr11:77792240..77792241, +
6.58e-50FFCP PHASE2:Hg19::chr12:19928351..19928358,+#_26333e8591f41cbf8938445f024aecc7p2@ENST00000535764
6.58e-50FFCP PHASE1:Hg19::chr5:5146235..5146246,+#_26333e8591f41cbf8938445f024aecc7p7@ADAMTS16
6.58e-50FFCP PHASE2:Hg19::chr21:28899015..28899027,+#_26333e8591f41cbf8938445f024aecc7p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE1:Hg19::chrX:70798285..70798290,+#_26333e8591f41cbf8938445f024aecc7p1@ACRC
6.58e-50FFCP PHASE2:Hg19::chr5:5146235..5146246,+#_26333e8591f41cbf8938445f024aecc7p7@ADAMTS16
6.58e-50FFCP PHASE1:Hg19::chr21:28899015..28899027,+#_26333e8591f41cbf8938445f024aecc7p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE2:Hg19::chrX:70798285..70798290,+#_26333e8591f41cbf8938445f024aecc7p1@ACRC
6.58e-50FFCP PHASE1:Hg19::chr12:19928351..19928358,+#_26333e8591f41cbf8938445f024aecc7p2@ENST00000535764
6.62e-41FFCP PHASE2:Hg19::chrX:147062877..147062885,+#_5509ce53096dc11048723ee444ed73f3p2@FMR1NB
6.62e-41FFCP PHASE1:Hg19::chr18:1099004..1099011,+#_5509ce53096dc11048723ee444ed73f3p@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_5509ce53096dc11048723ee444ed73f3p25@COL12A1
6.62e-41FFCP PHASE1:Hg19::chr3:98275000..98275016,-#_5509ce53096dc11048723ee444ed73f3p@chr3:98275000..98275016, -
6.62e-41FFCP PHASE2:Hg19::chr18:514484..514495,+#_5509ce53096dc11048723ee444ed73f3p@chr18:514484..514495, +
6.62e-41FFCP PHASE2:Hg19::chr2:158155450..158155474,-#_5509ce53096dc11048723ee444ed73f3p1@ENST00000410472
6.62e-41FFCP PHASE1:Hg19::chr2:158155450..158155474,-#_5509ce53096dc11048723ee444ed73f3p1@ENST00000410472
6.62e-41FFCP PHASE2:Hg19::chr2:38402050..38402059,+#_5509ce53096dc11048723ee444ed73f3p@chr2:38402050..38402059, +
6.62e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_5509ce53096dc11048723ee444ed73f3p25@COL12A1
6.62e-41FFCP PHASE2:Hg19::chr3:98275000..98275016,-#_5509ce53096dc11048723ee444ed73f3p@chr3:98275000..98275016, -
6.62e-41FFCP PHASE2:Hg19::chr18:1099004..1099011,+#_5509ce53096dc11048723ee444ed73f3p@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr18:514484..514495,+#_5509ce53096dc11048723ee444ed73f3p@chr18:514484..514495, +
6.62e-41FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_5509ce53096dc11048723ee444ed73f3p@chr4:166513830..166513834, +
6.62e-41FFCP PHASE1:Hg19::chr2:38402050..38402059,+#_5509ce53096dc11048723ee444ed73f3p@chr2:38402050..38402059, +
6.62e-41FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_5509ce53096dc11048723ee444ed73f3p@chr4:166513830..166513834, +
6.62e-41FFCP PHASE1:Hg19::chrX:147062877..147062885,+#_5509ce53096dc11048723ee444ed73f3p2@FMR1NB
9.91e-41FFCP PHASE1:Hg19::chr6:67772946..67772961,+#_eb96ce3891695b7054abd246abec08ffp@chr6:67772946..67772961, +
9.91e-41FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_eb96ce3891695b7054abd246abec08ffp@chr12:127737083..127737103, -
9.91e-41FFCP PHASE1:Hg19::chr6:32515336..32515343,-#_eb96ce3891695b7054abd246abec08ffp@chr6:32515336..32515343, -
9.91e-41FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_eb96ce3891695b7054abd246abec08ffp@chr12:127737083..127737103, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.