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UBERON:0003909

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Name:sinusoid
Namespace:FANTOM
Definition:"small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)]
Xrefs:
links:

FMA:63131
TAO:0005261

ZFA:0005261
Synonyms: "sinusoidal blood vessel" EXACT []
"sinusoidal blood vessel endothelium" EXACT [ZFA:0005261]
Comments:the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:2005260(fenestrated capillary)



Children

is a:UBERON:0001281 (hepatic sinusoid)
part of:CL:0002262 (endothelial cell of sinusoid)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003909 (sinusoid), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_fbf691b76dbf51aee16a84a4e9943b11p2@ENST00000448698
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_fbf691b76dbf51aee16a84a4e9943b11p2@ENST00000448698
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_2ce8c5f821a8300836fe15d6fbf66557p8@Map3k8
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_2ce8c5f821a8300836fe15d6fbf66557-, p@chr18:65159026..65159034
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr6:51831254..51831256, -
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_2ce8c5f821a8300836fe15d6fbf66557p8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_2ce8c5f821a8300836fe15d6fbf66557+, p@chr3:90270007..90270012
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:48685851..48685860, -
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_2ce8c5f821a8300836fe15d6fbf66557-, p@chr11:117829935..117829959
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_2ce8c5f821a8300836fe15d6fbf66557+, p@chr10:94580525..94580530
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_2ce8c5f821a8300836fe15d6fbf66557p6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_2ce8c5f821a8300836fe15d6fbf66557-, p@chr8:114123814..114123821
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_2ce8c5f821a8300836fe15d6fbf66557p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_2ce8c5f821a8300836fe15d6fbf66557p@chr12:88237840..88237851, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass fenestrated blood vessel endothelium (TAO:0005260)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.