Personal tools

UBERON:0004288

From FANTOM5_SSTAR

Revision as of 08:45, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:skeleton
Namespace:FANTOM
Definition:"all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton]
Xrefs:
links:

AEO:0000168
EFO:0000806
EHDAA2:0001843
EHDAA:5047
EHDAA:8005
EHDAA:8041
FMA:23875
GAID:177
galen:Skeleton
MA:0003006
MAT:0000032
MESH:A.02.835
MIAA:0000032
OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
SCTID:361378004
VSAO:0000026

XAO:0004053
Synonyms: "set of all bones" EXACT []
"set of bones of body" EXACT []
Comments:Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons.
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000477(anatomical cluster)
disjoint_from:UBERON:0004770(articular system)
part_of:UBERON:0001434(skeletal system)



Children

part of:UBERON:0005863 (cartilaginous condensation),UBERON:0005866 (pre-cartilage condensation),UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004288 (skeleton), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_1e5a46a00cb84e51a124c87c983d473dp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_1e5a46a00cb84e51a124c87c983d473dp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_8d34c09ac6557e076ffbce01439f2faap11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_8d34c09ac6557e076ffbce01439f2faap13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_8d34c09ac6557e076ffbce01439f2faap13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_8d34c09ac6557e076ffbce01439f2faap@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_8d34c09ac6557e076ffbce01439f2faap@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_8d34c09ac6557e076ffbce01439f2faap12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_8d34c09ac6557e076ffbce01439f2faap12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_8d34c09ac6557e076ffbce01439f2faap11@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_a907e9f8eccb7fb0a9258453db3d31c6p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_a907e9f8eccb7fb0a9258453db3d31c6p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_a907e9f8eccb7fb0a9258453db3d31c6p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_a907e9f8eccb7fb0a9258453db3d31c6p14@MAB21L2
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_a0faf0c47a29ec50cafabea24047290dp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_a0faf0c47a29ec50cafabea24047290dp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_1ebe0985513b9a63d6bcd9ce00b6e44d+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_1ebe0985513b9a63d6bcd9ce00b6e44dp9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_1ebe0985513b9a63d6bcd9ce00b6e44dp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_1ebe0985513b9a63d6bcd9ce00b6e44dp17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_fb260202668d1b0393ce9d5eefa1aac0p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_fb260202668d1b0393ce9d5eefa1aac0p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_3bf64b8262b0682ded6fa600e3e645b6p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_3bf64b8262b0682ded6fa600e3e645b6p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_3bf64b8262b0682ded6fa600e3e645b6p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_3bf64b8262b0682ded6fa600e3e645b6p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_3bf64b8262b0682ded6fa600e3e645b6p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_3bf64b8262b0682ded6fa600e3e645b6p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_2bbe79cab8e8dd02b65794dc27bcc3d9p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_2bbe79cab8e8dd02b65794dc27bcc3d9p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_2bbe79cab8e8dd02b65794dc27bcc3d9p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_2bbe79cab8e8dd02b65794dc27bcc3d9p@chr2:33519090..33519092, +
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b5ffd70e9a29cdf04b6063dea703a81ap26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b5ffd70e9a29cdf04b6063dea703a81ap26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_dadf23c44c832b6001afc5ada4bc8cefp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_dadf23c44c832b6001afc5ada4bc8cefp@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_dadf23c44c832b6001afc5ada4bc8cefp@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_5ab5abd6003e17f9aab93088091871d8p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_5ab5abd6003e17f9aab93088091871d8p@chr6:51525810..51525817, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_bd3e0db4295b28f49b4bcdfd0f904f4e-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_bd3e0db4295b28f49b4bcdfd0f904f4ep@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_c6f8125c89ebb5fa561d5e8d1d458a16p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_c6f8125c89ebb5fa561d5e8d1d458a16p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_c6f8125c89ebb5fa561d5e8d1d458a16p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_c6f8125c89ebb5fa561d5e8d1d458a16p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_c6f8125c89ebb5fa561d5e8d1d458a16p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_c6f8125c89ebb5fa561d5e8d1d458a16p8@LHX8
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_43c44c17f3de3e86085da7e1fc389849p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_43c44c17f3de3e86085da7e1fc389849p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_43c44c17f3de3e86085da7e1fc389849p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_43c44c17f3de3e86085da7e1fc389849p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7a9611ad6bdeabc5c68faeb4199bdf81p@chr6:46190219..46190230, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_51fe20f8d6ab0ea0ffcdbfa5138043fcp@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_51fe20f8d6ab0ea0ffcdbfa5138043fcp@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_5c7ba523c2951387afea4be5dd8312fcp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_5c7ba523c2951387afea4be5dd8312fcp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_5c7ba523c2951387afea4be5dd8312fcp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_5c7ba523c2951387afea4be5dd8312fcp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_5c7ba523c2951387afea4be5dd8312fc+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_5c7ba523c2951387afea4be5dd8312fcp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_5c7ba523c2951387afea4be5dd8312fcp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_5c7ba523c2951387afea4be5dd8312fcp@chr6:4490674..4490679, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_924e38b664f8472087fdcf6e56c15a48p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_924e38b664f8472087fdcf6e56c15a48p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_04ae1fbf69dbb55b5aec06691ded793bp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_04ae1fbf69dbb55b5aec06691ded793bp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_9fa431d9437ad7c68a2f4791cd597db9p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_9fa431d9437ad7c68a2f4791cd597db9p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_eebd0d4cc04b1b44272bbec8e7002fdbp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_eebd0d4cc04b1b44272bbec8e7002fdbp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_e52e1afc12ffb4a1a30c4ac29a2ad361p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_e52e1afc12ffb4a1a30c4ac29a2ad361p5@Pla2g5
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_bc7e20a76449c0c5afa8db55265c7c9dp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_bc7e20a76449c0c5afa8db55265c7c9dp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_bc7e20a76449c0c5afa8db55265c7c9dp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_bc7e20a76449c0c5afa8db55265c7c9dp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_bc7e20a76449c0c5afa8db55265c7c9dp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_bc7e20a76449c0c5afa8db55265c7c9dp4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_557aaa734b94a751f979745b4373a5ddp9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_557aaa734b94a751f979745b4373a5ddp9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_5adfade046b01a2c4f265ab286ca901cp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_5adfade046b01a2c4f265ab286ca901cp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_f2f53f4e70f32ff9e53f53e254a8c95f-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_f2f53f4e70f32ff9e53f53e254a8c95fp@chr13:58291223..58291226, +
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_444345b06b86a21d8a502cc0cd27e3e7p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_444345b06b86a21d8a502cc0cd27e3e7p2@uc009mdq.1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.