Personal tools

Difference between revisions of "UBERON:0004291"

From FANTOM5_SSTAR

Jump to: navigation, search
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{UBERON
 
{{UBERON
|id=UBERON:0004291
+
|alt_id=
|name=heart rudiment
 
|namespace=
 
|def="a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
 
|xref=ZFA:0000115
 
|is_a=UBERON:0000483;;UBERON:0004120
 
|synonym="heart cone" EXACT [GO:0003313];;"rudimentary heart" EXACT [ZFA:0000115]
 
 
|comment=
 
|comment=
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
|subset=
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=UBERON:0003084;;UBERON:0004139
 
|develops_from=UBERON:0003084;;UBERON:0004139
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0004291
 +
|is_a=UBERON:0012275
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=heart rudiment
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|is_obsolete=
 
 
|preceded_by=
 
|preceded_by=
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string
 +
|subset=
 +
|synonym="heart cone" EXACT [GO:0003313];;"rudimentary heart" EXACT [ZFA:0000115]
 +
|union_of=
 +
|xref=TAO:0000115;;ZFA:0000115
 
}}
 
}}

Latest revision as of 08:45, 12 September 2014

Name:heart rudiment
Namespace:FANTOM
Definition:"a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
Xrefs:
links:

TAO:0000115

ZFA:0000115
Synonyms: "heart cone" EXACT [GO:0003313]
"rudimentary heart" EXACT [ZFA:0000115]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0012275(meso-epithelium)
develops_from:UBERON:0003084(heart primordium),UBERON:0004139(cardiogenic plate)



Children

develops from:UBERON:0005498 (primitive heart tube)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004291 (heart rudiment), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr4:147375434..147375447, +
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_8da83f623ed9d2e1b4882f9c1006bd3fp@chr1:137747392..137747402, -
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_c2098f72f6ae8a74426a0db946c00732p@chr4:140980456..140980463, +
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_c2098f72f6ae8a74426a0db946c00732p@chr4:140980456..140980463, +
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr1:137737483..137737497, -
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_e8eaa5279d018a4aaa5b7f41f3a8deefp@chr12:113728951..113728965, +
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr4:147375200..147375220, +
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr4:147375200..147375220, +
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr19:36187511..36187515, -
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_eeaa5d18c162642731eb77f1a3bf2a1cp@chr19:36187511..36187515, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_3b0441732889304b94e083d8f566b6dap@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_3b0441732889304b94e083d8f566b6dap@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_3b0441732889304b94e083d8f566b6dap@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_3b0441732889304b94e083d8f566b6dap@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744333..137744352, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568737..55568746, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_3b0441732889304b94e083d8f566b6dap@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744550..137744565, +
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_3b0441732889304b94e083d8f566b6dap2@Mov10l1
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_3b0441732889304b94e083d8f566b6dap@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_3b0441732889304b94e083d8f566b6dap@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_3b0441732889304b94e083d8f566b6dap@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_3b0441732889304b94e083d8f566b6da+, p@chr1:137744636..137744654
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568937..55568988, -
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_3b0441732889304b94e083d8f566b6dap@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_3b0441732889304b94e083d8f566b6dap@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_3b0441732889304b94e083d8f566b6dap@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_3b0441732889304b94e083d8f566b6dap@chr1:137745434..137745445, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_3b0441732889304b94e083d8f566b6dap@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_3b0441732889304b94e083d8f566b6dap@chr4:147375901..147375913, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744550..137744565, +
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_3b0441732889304b94e083d8f566b6dap@chr14:55572120..55572173, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_3b0441732889304b94e083d8f566b6dap@chr1:137747289..137747313, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_3b0441732889304b94e083d8f566b6dap@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_3b0441732889304b94e083d8f566b6dap@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_3b0441732889304b94e083d8f566b6dap@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_3b0441732889304b94e083d8f566b6dap@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_3b0441732889304b94e083d8f566b6dap@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_3b0441732889304b94e083d8f566b6da-, p@chr14:55568937..55568988
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_3b0441732889304b94e083d8f566b6dap@chr14:55586837..55586880, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_3b0441732889304b94e083d8f566b6dap@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_3b0441732889304b94e083d8f566b6dap@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_3b0441732889304b94e083d8f566b6dap@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_3b0441732889304b94e083d8f566b6da+, p@chr1:137747289..137747313
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_3b0441732889304b94e083d8f566b6dap@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584663..55584731, -
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_3b0441732889304b94e083d8f566b6dap@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_3b0441732889304b94e083d8f566b6dap@chr1:137743272..137743307, +
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_3b0441732889304b94e083d8f566b6dap2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_3b0441732889304b94e083d8f566b6da-, p@chr14:55568790..55568803
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_3b0441732889304b94e083d8f566b6dap@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_3b0441732889304b94e083d8f566b6dap@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_3b0441732889304b94e083d8f566b6dap@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_3b0441732889304b94e083d8f566b6dap@chr14:55563577..55563611, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_3b0441732889304b94e083d8f566b6dap@chr1:137747953..137747967, -
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_3b0441732889304b94e083d8f566b6dap@chr14:55581579..55581620, -
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_7f7f62b007b4b9e45767a23727b73aa2p@chr1:137742152..137742184, -
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_7f7f62b007b4b9e45767a23727b73aa2p@chr1:137742152..137742184, -
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_43b10297217e2678fda1b7363dc3b4abp@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_43b10297217e2678fda1b7363dc3b4abp@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_43b10297217e2678fda1b7363dc3b4abp@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_43b10297217e2678fda1b7363dc3b4abp2@Tnni3
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_43b10297217e2678fda1b7363dc3b4abp2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_43b10297217e2678fda1b7363dc3b4abp@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_43b10297217e2678fda1b7363dc3b4abp@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_43b10297217e2678fda1b7363dc3b4abp@chr1:137742470..137742481, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_7d7dea209a25d9f787051e4641653620p5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_7d7dea209a25d9f787051e4641653620p5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_7d7dea209a25d9f787051e4641653620p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_7d7dea209a25d9f787051e4641653620p1@ENSMUST00000154140
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_7d7dea209a25d9f787051e4641653620p11@Arhgap31
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_7d7dea209a25d9f787051e4641653620p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_7d7dea209a25d9f787051e4641653620p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_7d7dea209a25d9f787051e4641653620p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_7d7dea209a25d9f787051e4641653620p11@Arhgap31
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_7d7dea209a25d9f787051e4641653620p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_7d7dea209a25d9f787051e4641653620p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_7d7dea209a25d9f787051e4641653620p@chr19:36193739..36193752, -
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_b385bf3167647796cfe17194e7be0125p@chr9:24529233..24529237, -
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_b385bf3167647796cfe17194e7be0125p@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_716814bb1b480ace13b70504d4671739p6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_716814bb1b480ace13b70504d4671739p6@Usp20










Property "Property value" (as page type) with input value "UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.