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Revision as of 17:21, 15 June 2012

Name:lower digestive tract
Definition:"the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
Xrefs:
links:

EHDAA2:0000726
FMA:49179
galen:LowerGastrointestinalTract
MA:0000917
ncithesaurus:Lower_Gastrointestinal_Tract

SCTID:279973004
Synonyms: "gut" BROAD [GO:0048565]
"lower gastrointestinal tract" EXACT []
"lower GI tract" EXACT []
Comments:WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0004921(subdivision of digestive tract)
develops_from:UBERON:0001046(hindgut)
part_of:UBERON:0005409(gastrointestinal system)



Children

part of:UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.49e-79FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
3.49e-79FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
2.87e-53FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
2.87e-53FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
3.74e-53FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
3.74e-53FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
1.31e-45FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
1.31e-45FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
9.22e-44FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
9.22e-44FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
1.32e-42FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.32e-42FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.48e-40FFCP PHASE1:Hg19::chr4:157174324..157174332,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174324..157174332, +
1.48e-40FFCP PHASE2:Hg19::chr1:55404829..55404833,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:55404829..55404833, -
1.48e-40FFCP PHASE2:Hg19::chr12:68155058..68155064,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:68155058..68155064, -
1.48e-40FFCP PHASE1:Hg19::chr7:30499737..30499761,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:30499737..30499761, +
1.48e-40FFCP PHASE1:Hg19::chr3:171088092..171088113,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:171088092..171088113, -
1.48e-40FFCP PHASE1:Hg19::chr8:128419359..128419367,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128419359..128419367, -
1.48e-40FFCP PHASE2:Hg19::chr8:128415944..128415958,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128415944..128415958, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174075..157174084,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174075..157174084, +
1.48e-40FFCP PHASE1:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccdp20@DENND5B
1.48e-40FFCP PHASE1:Hg19::chr2:205036975..205037009,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:205036975..205037009, -
1.48e-40FFCP PHASE1:Hg19::chr8:128259602..128259609,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128259602..128259609, -
1.48e-40FFCP PHASE2:Hg19::chr5:97747048..97747059,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:97747048..97747059, +
1.48e-40FFCP PHASE2:Hg19::chr4:71222797..71222807,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:71222797..71222807, +
1.48e-40FFCP PHASE2:Hg19::chr14:26793415..26793426,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:26793415..26793426, -
1.48e-40FFCP PHASE2:Hg19::chr21:37143915..37143924,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr21:37143915..37143924, -
1.48e-40FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:198324742..198324745, +
1.48e-40FFCP PHASE2:Hg19::chr7:87232440..87232448,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87232440..87232448, -
1.48e-40FFCP PHASE2:Hg19::chr2:159306961..159306975,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:159306961..159306975, +
1.48e-40FFCP PHASE2:Hg19::chr18:53252911..53252918,-#_75bb4d3d88c960d8349cd366f05fbccdp106@TCF4
1.48e-40FFCP PHASE2:Hg19::chr13:28541442..28541451,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:28541442..28541451, -
1.48e-40FFCP PHASE1:Hg19::chr8:99425711..99425716,-#_75bb4d3d88c960d8349cd366f05fbccdp1@ENST00000518956
1.48e-40FFCP PHASE1:Hg19::chr2:191384465..191384471,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:191384465..191384471, -
1.48e-40FFCP PHASE2:Hg19::chr13:48703799..48703838,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:48703799..48703838, -
1.48e-40FFCP PHASE1:Hg19::chr8:128807259..128807281,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128807259..128807281, +
1.48e-40FFCP PHASE2:Hg19::chr7:12134400..12134410,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:12134400..12134410, -
1.48e-40FFCP PHASE1:Hg19::chr6:5491056..5491061,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491056..5491061, +
1.48e-40FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128419359..128419367, -
1.48e-40FFCP PHASE1:Hg19::chr3:66354424..66354472,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:66354424..66354472, +
1.48e-40FFCP PHASE2:Hg19::chr3:140054665..140054678,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054665..140054678, -
1.48e-40FFCP PHASE1:Hg19::chr8:127438794..127438800,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127438794..127438800, +
1.48e-40FFCP PHASE1:Hg19::chr4:157174023..157174034,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174023..157174034, +
1.48e-40FFCP PHASE1:Hg19::chr16:19661615..19661621,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:19661615..19661621, +
1.48e-40FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128259602..128259609, -
1.48e-40FFCP PHASE1:Hg19::chr18:39550015..39550034,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr18:39550015..39550034, +
1.48e-40FFCP PHASE2:Hg19::chr13:32790683..32790693,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:32790683..32790693, +
1.48e-40FFCP PHASE2:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccdp20@DENND5B
1.48e-40FFCP PHASE1:Hg19::chr7:138064518..138064531,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:138064518..138064531, -
1.48e-40FFCP PHASE2:Hg19::chr13:99661014..99661016,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:99661014..99661016, -
1.48e-40FFCP PHASE2:Hg19::chr1:93128331..93128338,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:93128331..93128338, -
1.48e-40FFCP PHASE2:Hg19::chr2:163302780..163302789,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:163302780..163302789, -
1.48e-40FFCP PHASE1:Hg19::chr6:104674708..104674749,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:104674708..104674749, -
1.48e-40FFCP PHASE1:Hg19::chr3:148165064..148165071,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148165064..148165071, -
1.48e-40FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:54830821..54830841, +
1.48e-40FFCP PHASE2:Hg19::chr8:127438794..127438800,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127438794..127438800, +
1.48e-40FFCP PHASE1:Hg19::chr1:118658073..118658082,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:118658073..118658082, -
1.48e-40FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:65466889..65466894, -
1.48e-40FFCP PHASE2:Hg19::chr16:55344418..55344442,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:55344418..55344442, +
1.48e-40FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128807259..128807281, +
1.48e-40FFCP PHASE2:Hg19::chr14:76289395..76289406,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:76289395..76289406, +
1.48e-40FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491056..5491061, +
1.48e-40FFCP PHASE2:Hg19::chr3:148164659..148164667,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148164659..148164667, -
1.48e-40FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:60749901..60749904, -
1.48e-40FFCP PHASE1:Hg19::chr12:31632597..31632607,-#_75bb4d3d88c960d8349cd366f05fbccdp13@DENND5B
1.48e-40FFCP PHASE2:Hg19::chr3:185823573..185823578,-#_75bb4d3d88c960d8349cd366f05fbccdp26@ETV5
1.48e-40FFCP PHASE1:Hg19::chr2:127711416..127711419,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:127711416..127711419, +
1.48e-40FFCP PHASE2:Hg19::chr10:2328652..2328660,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr10:2328652..2328660, +
1.48e-40FFCP PHASE1:Hg19::chr8:39792182..39792188,+#_75bb4d3d88c960d8349cd366f05fbccdp14@IDO2
1.48e-40FFCP PHASE2:Hg19::chr7:30499737..30499761,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:30499737..30499761, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174108..157174136,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174108..157174136, +
1.48e-40FFCP PHASE1:Hg19::chr3:156822661..156822696,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:156822661..156822696, -
1.48e-40FFCP PHASE1:Hg19::chr8:128260156..128260173,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128260156..128260173, +
1.48e-40FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:104674708..104674749, -
1.48e-40FFCP PHASE2:Hg19::chr16:19661585..19661596,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:19661585..19661596, +
1.48e-40FFCP PHASE1:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:24797750..24797759, -
1.48e-40FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:66794389..66794398, +
1.48e-40FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:77730114..77730120, -
1.48e-40FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_75bb4d3d88c960d8349cd366f05fbccdp14@STRBP
1.48e-40FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:78621016..78621042, +
1.48e-40FFCP PHASE1:Hg19::chr7:87049573..87049608,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87049573..87049608, -
1.48e-40FFCP PHASE1:Hg19::chr6:8446968..8446983,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8446968..8446983, +
1.48e-40FFCP PHASE1:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:19707156..19707203, +
1.48e-40FFCP PHASE1:Hg19::chr8:127681013..127681042,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127681013..127681042, -
1.48e-40FFCP PHASE2:Hg19::chr4:169559850..169559856,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:169559850..169559856, -
1.48e-40FFCP PHASE1:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:46093198..46093203, +
1.48e-40FFCP PHASE2:Hg19::chr8:99425711..99425716,-#_75bb4d3d88c960d8349cd366f05fbccdp1@ENST00000518956
1.48e-40FFCP PHASE1:Hg19::chr6:5491081..5491106,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491081..5491106, +
1.48e-40FFCP PHASE1:Hg19::chrX:138909080..138909093,-#_75bb4d3d88c960d8349cd366f05fbccdp@chrX:138909080..138909093, -
1.48e-40FFCP PHASE1:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:110258158..110258170, -
1.48e-40FFCP PHASE1:Hg19::chr8:55331615..55331618,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:55331615..55331618, +
1.48e-40FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:57619538..57619575, -
1.48e-40FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054724..140054735, -
1.48e-40FFCP PHASE2:Hg19::chr2:191384421..191384433,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:191384421..191384433, -
1.48e-40FFCP PHASE1:Hg19::chr15:45950558..45950561,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:45950558..45950561, +
1.48e-40FFCP PHASE1:Hg19::chr8:127440115..127440120,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127440115..127440120, +
1.48e-40FFCP PHASE2:Hg19::chr8:39792182..39792188,+#_75bb4d3d88c960d8349cd366f05fbccdp14@IDO2
1.48e-40FFCP PHASE1:Hg19::chr4:157174062..157174071,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174062..157174071, +
1.48e-40FFCP PHASE1:Hg19::chr8:128418747..128418756,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418747..128418756, -
1.48e-40FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:55404829..55404833, -