Personal tools

UBERON:0004907: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004907
|alt_id=
|name=lower digestive tract
|namespace=
|def="the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
|xref=EHDAA2:0000726;;FMA:49179;;galen:LowerGastrointestinalTract;;MA:0000917;;ncithesaurus:Lower_Gastrointestinal_Tract;;SCTID:279973004
|is_a=UBERON:0004921
|synonym="gut" BROAD [GO:0048565];;"lower gastrointestinal tract" EXACT [];;"lower GI tract" EXACT []
|comment=WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
|comment=WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=UBERON:0001046
|develops_from=UBERON:0001046
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004907
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=lower digestive tract
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005409
|part_of=UBERON:0005409
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="gut" BROAD [GO:0048565];;"lower gastrointestinal tract" EXACT [];;"lower GI tract" EXACT []
|union_of=
|xref=EHDAA2:0000726;;FMA:49179;;galen:LowerGastrointestinalTract;;MA:0000917;;ncithesaurus:Lower_Gastrointestinal_Tract;;SCTID:279973004
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:lower digestive tract
Namespace:FANTOM
Definition:"the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
Xrefs:
links:

EHDAA2:0000726
FMA:49179
galen:LowerGastrointestinalTract
MA:0000917
ncithesaurus:Lower_Gastrointestinal_Tract

SCTID:279973004
Synonyms: "gut" BROAD [GO:0048565]
"lower gastrointestinal tract" EXACT []
"lower GI tract" EXACT []
Comments:WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
develops_from:UBERON:0001046(hindgut)
part_of:UBERON:0005409(gastrointestinal system)



Children

part of:UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.49e-79FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
3.49e-79FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
2.87e-53FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
2.87e-53FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
3.74e-53FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
3.74e-53FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
1.31e-45FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
1.31e-45FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
9.22e-44FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
9.22e-44FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
1.32e-42FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.32e-42FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.48e-40FFCP PHASE2:Hg19::chr13:54830821..54830841,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:54830821..54830841, +
1.48e-40FFCP PHASE2:Hg19::chr12:65466889..65466894,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:65466889..65466894, -
1.48e-40FFCP PHASE1:Hg19::chr3:148165064..148165071,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148165064..148165071, -
1.48e-40FFCP PHASE2:Hg19::chr8:128691603..128691614,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128691603..128691614, -
1.48e-40FFCP PHASE2:Hg19::chr2:191384465..191384471,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:191384465..191384471, -
1.48e-40FFCP PHASE1:Hg19::chr8:127445866..127445873,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127445866..127445873, +
1.48e-40FFCP PHASE2:Hg19::chr8:55331615..55331618,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:55331615..55331618, +
1.48e-40FFCP PHASE1:Hg19::chr6:372660..372670,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:372660..372670, -
1.48e-40FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:60749901..60749904, -
1.48e-40FFCP PHASE2:Hg19::chr3:66354424..66354472,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:66354424..66354472, +
1.48e-40FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:54830821..54830841, +
1.48e-40FFCP PHASE1:Hg19::chr1:118658073..118658082,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:118658073..118658082, -
1.48e-40FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:65466889..65466894, -
1.48e-40FFCP PHASE2:Hg19::chr4:157174023..157174034,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174023..157174034, +
1.48e-40FFCP PHASE2:Hg19::chr6:91774965..91774974,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:91774965..91774974, +
1.48e-40FFCP PHASE1:Hg19::chr7:141499716..141499722,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:141499716..141499722, +
1.48e-40FFCP PHASE2:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:77730114..77730120, -
1.48e-40FFCP PHASE1:Hg19::chr2:127711416..127711419,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:127711416..127711419, +
1.48e-40FFCP PHASE2:Hg19::chr7:87232406..87232409,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87232406..87232409, -
1.48e-40FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:77730114..77730120, -
1.48e-40FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127445866..127445873, +
1.48e-40FFCP PHASE1:Hg19::chr6:8389087..8389116,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8389087..8389116, -
1.48e-40FFCP PHASE1:Hg19::chr3:156822661..156822696,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:156822661..156822696, -
1.48e-40FFCP PHASE2:Hg19::chr3:148165064..148165071,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148165064..148165071, -
1.48e-40FFCP PHASE1:Hg19::chr7:12134371..12134377,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:12134371..12134377, -
1.48e-40FFCP PHASE1:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:24797750..24797759, -
1.48e-40FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:66794389..66794398, +
1.48e-40FFCP PHASE2:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:46093198..46093203, +
1.48e-40FFCP PHASE2:Hg19::chr1:118658073..118658082,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:118658073..118658082, -
1.48e-40FFCP PHASE1:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:19707156..19707203, +
1.48e-40FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:110258158..110258170, -
1.48e-40FFCP PHASE2:Hg19::chr6:372660..372670,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:372660..372670, -
1.48e-40FFCP PHASE1:Hg19::chr8:128415915..128415922,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128415915..128415922, +
1.48e-40FFCP PHASE1:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:110258158..110258170, -
1.48e-40FFCP PHASE2:Hg19::chr2:127711416..127711419,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:127711416..127711419, +
1.48e-40FFCP PHASE1:Hg19::chr15:45950558..45950561,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:45950558..45950561, +
1.48e-40FFCP PHASE1:Hg19::chr9:98505341..98505348,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr9:98505341..98505348, +
1.48e-40FFCP PHASE1:Hg19::chr4:157174062..157174071,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174062..157174071, +
1.48e-40FFCP PHASE1:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:46093198..46093203, +
1.48e-40FFCP PHASE1:Hg19::chr10:24726466..24726472,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr10:24726466..24726472, +
1.48e-40FFCP PHASE2:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:60749901..60749904, -
1.48e-40FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127817393..127817400, +
1.48e-40FFCP PHASE2:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:24797750..24797759, -
1.48e-40FFCP PHASE1:Hg19::chr7:87232419..87232430,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87232419..87232430, -
1.48e-40FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:55404829..55404833, -
1.48e-40FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8389087..8389116, -
1.48e-40FFCP PHASE2:Hg19::chr3:156822661..156822696,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:156822661..156822696, -
1.48e-40FFCP PHASE1:Hg19::chr2:148148505..148148515,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:148148505..148148515, -
1.48e-40FFCP PHASE2:Hg19::chr9:104610923..104610939,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr9:104610923..104610939, -
1.48e-40FFCP PHASE1:Hg19::chr1:19522690..19522704,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:19522690..19522704, -
1.48e-40FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr18:39550015..39550034, +
1.48e-40FFCP PHASE2:Hg19::chr16:53671764..53671771,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:53671764..53671771, -
1.48e-40FFCP PHASE2:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:19707156..19707203, +
1.48e-40FFCP PHASE1:Hg19::chr8:127449395..127449424,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127449395..127449424, +
1.48e-40FFCP PHASE1:Hg19::chr4:71222797..71222807,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:71222797..71222807, +
1.48e-40FFCP PHASE1:Hg19::chr16:53671764..53671771,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:53671764..53671771, -
1.48e-40FFCP PHASE1:Hg19::chr8:128418828..128418839,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418828..128418839, -
1.48e-40FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr21:37143915..37143924, -
1.48e-40FFCP PHASE2:Hg19::chr8:128415915..128415922,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128415915..128415922, +
1.48e-40FFCP PHASE2:Hg19::chr9:98505341..98505348,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr9:98505341..98505348, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174062..157174071,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174062..157174071, +
1.48e-40FFCP PHASE1:Hg19::chr8:128118744..128118753,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128118744..128118753, -
1.48e-40FFCP PHASE1:Hg19::chr18:53252911..53252918,-#_75bb4d3d88c960d8349cd366f05fbccdp106@TCF4
1.48e-40FFCP PHASE1:Hg19::chr6:31683061..31683070,+#_75bb4d3d88c960d8349cd366f05fbccdp5@LY6G6D
1.48e-40FFCP PHASE2:Hg19::chr8:127817393..127817400,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127817393..127817400, +
1.48e-40FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:97958802..97958804, -
1.48e-40FFCP PHASE2:Hg19::chr15:45950558..45950561,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:45950558..45950561, +
1.48e-40FFCP PHASE1:Hg19::chrX:42162203..42162241,+#_75bb4d3d88c960d8349cd366f05fbccdp@chrX:42162203..42162241, +
1.48e-40FFCP PHASE1:Hg19::chr2:127711472..127711475,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:127711472..127711475, +
1.48e-40FFCP PHASE2:Hg19::chr7:87232419..87232430,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87232419..87232430, -
1.48e-40FFCP PHASE2:Hg19::chr8:127449395..127449424,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127449395..127449424, +
1.48e-40FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054665..140054678, -
1.48e-40FFCP PHASE2:Hg19::chr7:141499716..141499722,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:141499716..141499722, +
1.48e-40FFCP PHASE2:Hg19::chr2:148148505..148148515,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:148148505..148148515, -
1.48e-40FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8389389..8389429, -
1.48e-40FFCP PHASE2:Hg19::chr1:19522690..19522704,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:19522690..19522704, -
1.48e-40FFCP PHASE2:Hg19::chr13:28541425..28541439,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:28541425..28541439, -
1.48e-40FFCP PHASE1:Hg19::chr8:127568784..127568794,+#_75bb4d3d88c960d8349cd366f05fbccdp6@ENST00000524320
1.48e-40FFCP PHASE1:Hg19::chr7:12134400..12134410,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:12134400..12134410, -
1.48e-40FFCP PHASE1:Hg19::chr3:24797832..24797838,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:24797832..24797838, -
1.48e-40FFCP PHASE2:Hg19::chr12:65277574..65277589,+#_75bb4d3d88c960d8349cd366f05fbccdp2@FLJ41278
1.48e-40FFCP PHASE1:Hg19::chr13:28541425..28541439,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:28541425..28541439, -
1.48e-40FFCP PHASE2:Hg19::chr7:12134371..12134377,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:12134371..12134377, -
1.48e-40FFCP PHASE2:Hg19::chr2:66794389..66794398,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:66794389..66794398, +
1.48e-40FFCP PHASE2:Hg19::chr10:24726466..24726472,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr10:24726466..24726472, +
1.48e-40FFCP PHASE2:Hg19::chr8:128418828..128418839,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418828..128418839, -
1.48e-40FFCP PHASE1:Hg19::chr14:26793415..26793426,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:26793415..26793426, -
1.48e-40FFCP PHASE2:Hg19::chr7:97958802..97958804,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:97958802..97958804, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004907&oldid=3277715"