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{{UBERON
{{UBERON
|id=UBERON:0004907
|alt_id=
|name=lower digestive tract
|namespace=
|def="the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
|xref=EHDAA2:0000726;;FMA:49179;;galen:LowerGastrointestinalTract;;MA:0000917;;ncithesaurus:Lower_Gastrointestinal_Tract;;SCTID:279973004
|is_a=UBERON:0000077;;UBERON:0004921
|synonym="gut" BROAD [GO:0048565];;"lower gastrointestinal tract" EXACT [];;"lower GI tract" EXACT []
|comment=WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
|comment=WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0001046
|develops_from=UBERON:0001046
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004907
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=lower digestive tract
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005409
|part_of=UBERON:0005409
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="gut" BROAD [GO:0048565];;"lower gastrointestinal tract" EXACT [];;"lower GI tract" EXACT []
|union_of=
|xref=EHDAA2:0000726;;FMA:49179;;galen:LowerGastrointestinalTract;;MA:0000917;;ncithesaurus:Lower_Gastrointestinal_Tract;;SCTID:279973004
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:lower digestive tract
Namespace:FANTOM
Definition:"the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
Xrefs:
links:

EHDAA2:0000726
FMA:49179
galen:LowerGastrointestinalTract
MA:0000917
ncithesaurus:Lower_Gastrointestinal_Tract

SCTID:279973004
Synonyms: "gut" BROAD [GO:0048565]
"lower gastrointestinal tract" EXACT []
"lower GI tract" EXACT []
Comments:WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
develops_from:UBERON:0001046(hindgut)
part_of:UBERON:0005409(gastrointestinal system)



Children

part of:UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.49e-79FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
3.49e-79FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
2.87e-53FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
2.87e-53FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
3.74e-53FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
3.74e-53FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
1.31e-45FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
1.31e-45FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
9.22e-44FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
9.22e-44FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
1.32e-42FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.32e-42FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.48e-40FFCP PHASE2:Hg19::chr13:99661014..99661016,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:99661014..99661016, -
1.48e-40FFCP PHASE2:Hg19::chr1:93128331..93128338,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:93128331..93128338, -
1.48e-40FFCP PHASE1:Hg19::chr13:32790683..32790693,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:32790683..32790693, +
1.48e-40FFCP PHASE2:Hg19::chr2:163302780..163302789,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:163302780..163302789, -
1.48e-40FFCP PHASE1:Hg19::chr6:104674708..104674749,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:104674708..104674749, -
1.48e-40FFCP PHASE1:Hg19::chr10:2328652..2328660,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr10:2328652..2328660, +
1.48e-40FFCP PHASE2:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccdp20@DENND5B
1.48e-40FFCP PHASE1:Hg19::chr7:138064518..138064531,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:138064518..138064531, -
1.48e-40FFCP PHASE2:Hg19::chr8:127438794..127438800,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127438794..127438800, +
1.48e-40FFCP PHASE1:Hg19::chr3:139373728..139373733,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:139373728..139373733, +
1.48e-40FFCP PHASE2:Hg19::chr16:55344418..55344442,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:55344418..55344442, +
1.48e-40FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128807259..128807281, +
1.48e-40FFCP PHASE2:Hg19::chr14:76289395..76289406,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:76289395..76289406, +
1.48e-40FFCP PHASE1:Hg19::chr13:99661014..99661016,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:99661014..99661016, -
1.48e-40FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491056..5491061, +
1.48e-40FFCP PHASE2:Hg19::chr3:148164659..148164667,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148164659..148164667, -
1.48e-40FFCP PHASE1:Hg19::chr18:28720966..28720970,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr18:28720966..28720970, +
1.48e-40FFCP PHASE2:Hg19::chr10:2328652..2328660,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr10:2328652..2328660, +
1.48e-40FFCP PHASE1:Hg19::chr3:140054724..140054735,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054724..140054735, -
1.48e-40FFCP PHASE1:Hg19::chr2:191384421..191384433,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:191384421..191384433, -
1.48e-40FFCP PHASE1:Hg19::chr8:39792182..39792188,+#_75bb4d3d88c960d8349cd366f05fbccdp14@IDO2
1.48e-40FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:169559850..169559856, -
1.48e-40FFCP PHASE2:Hg19::chr7:30499737..30499761,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:30499737..30499761, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174108..157174136,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174108..157174136, +
1.48e-40FFCP PHASE1:Hg19::chr16:55344418..55344442,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:55344418..55344442, +
1.48e-40FFCP PHASE2:Hg19::chr3:185823573..185823578,-#_75bb4d3d88c960d8349cd366f05fbccdp26@ETV5
1.48e-40FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:104674708..104674749, -
1.48e-40FFCP PHASE2:Hg19::chr16:19661585..19661596,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:19661585..19661596, +
1.48e-40FFCP PHASE1:Hg19::chr1:219739282..219739288,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:219739282..219739288, -
1.48e-40FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_75bb4d3d88c960d8349cd366f05fbccdp14@STRBP
1.48e-40FFCP PHASE1:Hg19::chr14:22850283..22850310,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:22850283..22850310, -
1.48e-40FFCP PHASE1:Hg19::chr8:128260156..128260173,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128260156..128260173, +
1.48e-40FFCP PHASE1:Hg19::chr1:163338283..163338286,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:163338283..163338286, +
1.48e-40FFCP PHASE1:Hg19::chr2:163302793..163302800,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:163302793..163302800, -
1.48e-40FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:78621016..78621042, +
1.48e-40FFCP PHASE1:Hg19::chr7:87049573..87049608,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87049573..87049608, -
1.48e-40FFCP PHASE1:Hg19::chr6:8446968..8446983,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8446968..8446983, +
1.48e-40FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:19661585..19661596, +
1.48e-40FFCP PHASE1:Hg19::chr8:127681013..127681042,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127681013..127681042, -
1.48e-40FFCP PHASE2:Hg19::chr8:99425711..99425716,-#_75bb4d3d88c960d8349cd366f05fbccdp1@ENST00000518956
1.48e-40FFCP PHASE1:Hg19::chr6:5491081..5491106,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491081..5491106, +
1.48e-40FFCP PHASE1:Hg19::chr3:148164872..148164919,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148164872..148164919, -
1.48e-40FFCP PHASE1:Hg19::chrX:138909080..138909093,-#_75bb4d3d88c960d8349cd366f05fbccdp@chrX:138909080..138909093, -
1.48e-40FFCP PHASE1:Hg19::chr8:55331615..55331618,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:55331615..55331618, +
1.48e-40FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:57619538..57619575, -
1.48e-40FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054724..140054735, -
1.48e-40FFCP PHASE2:Hg19::chr2:191384421..191384433,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:191384421..191384433, -
1.48e-40FFCP PHASE1:Hg19::chr8:127440115..127440120,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127440115..127440120, +
1.48e-40FFCP PHASE2:Hg19::chr8:39792182..39792188,+#_75bb4d3d88c960d8349cd366f05fbccdp14@IDO2
1.48e-40FFCP PHASE2:Hg19::chr4:169559850..169559856,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:169559850..169559856, -
1.48e-40FFCP PHASE2:Hg19::chr8:128260156..128260173,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128260156..128260173, +
1.48e-40FFCP PHASE2:Hg19::chr1:163338283..163338286,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:163338283..163338286, +
1.48e-40FFCP PHASE1:Hg19::chr4:157174324..157174332,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174324..157174332, +
1.48e-40FFCP PHASE1:Hg19::chr8:107667666..107667673,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:107667666..107667673, +
1.48e-40FFCP PHASE2:Hg19::chr1:219739282..219739288,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:219739282..219739288, -
1.48e-40FFCP PHASE1:Hg19::chr8:128418747..128418756,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418747..128418756, -
1.48e-40FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127681013..127681042, -
1.48e-40FFCP PHASE2:Hg19::chr1:93128346..93128356,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:93128346..93128356, -
1.48e-40FFCP PHASE2:Hg19::chr14:22850283..22850310,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:22850283..22850310, -
1.48e-40FFCP PHASE1:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccdp20@DENND5B
1.48e-40FFCP PHASE2:Hg19::chr2:163302793..163302800,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:163302793..163302800, -
1.48e-40FFCP PHASE1:Hg19::chr7:89797154..89797172,+#_75bb4d3d88c960d8349cd366f05fbccdp9@STEAP2
1.48e-40FFCP PHASE1:Hg19::chr3:171088092..171088113,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:171088092..171088113, -
1.48e-40FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87049573..87049608, -
1.48e-40FFCP PHASE2:Hg19::chr6:8446968..8446983,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8446968..8446983, +
1.48e-40FFCP PHASE2:Hg19::chr12:31632597..31632607,-#_75bb4d3d88c960d8349cd366f05fbccdp13@DENND5B
1.48e-40FFCP PHASE2:Hg19::chr8:127440115..127440120,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127440115..127440120, +
1.48e-40FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:198324742..198324745, +
1.48e-40FFCP PHASE2:Hg19::chr7:138064518..138064531,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:138064518..138064531, -
1.48e-40FFCP PHASE1:Hg19::chr2:205036975..205037009,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:205036975..205037009, -
1.48e-40FFCP PHASE1:Hg19::chr5:71987749..71987774,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:71987749..71987774, -
1.48e-40FFCP PHASE2:Hg19::chr6:5491081..5491106,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491081..5491106, +
1.48e-40FFCP PHASE2:Hg19::chr3:148164872..148164919,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148164872..148164919, -
1.48e-40FFCP PHASE2:Hg19::chrX:138909080..138909093,-#_75bb4d3d88c960d8349cd366f05fbccdp@chrX:138909080..138909093, -
1.48e-40FFCP PHASE2:Hg19::chr5:57619538..57619575,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:57619538..57619575, -
1.48e-40FFCP PHASE1:Hg19::chr8:128691603..128691614,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128691603..128691614, -
1.48e-40FFCP PHASE2:Hg19::chr18:28720966..28720970,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr18:28720966..28720970, +
1.48e-40FFCP PHASE1:Hg19::chr2:191384465..191384471,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:191384465..191384471, -
1.48e-40FFCP PHASE2:Hg19::chr8:128418747..128418756,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418747..128418756, -
1.48e-40FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:139373728..139373733, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174324..157174332,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174324..157174332, +
1.48e-40FFCP PHASE2:Hg19::chr8:107667666..107667673,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:107667666..107667673, +
1.48e-40FFCP PHASE2:Hg19::chr16:19661615..19661621,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:19661615..19661621, +
1.48e-40FFCP PHASE1:Hg19::chr4:157174023..157174034,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174023..157174034, +
1.48e-40FFCP PHASE2:Hg19::chr7:89797154..89797172,+#_75bb4d3d88c960d8349cd366f05fbccdp9@STEAP2
1.48e-40FFCP PHASE2:Hg19::chr3:171088092..171088113,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:171088092..171088113, -
1.48e-40FFCP PHASE1:Hg19::chr3:66354424..66354472,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:66354424..66354472, +
1.48e-40FFCP PHASE2:Hg19::chr9:125898916..125898941,-#_75bb4d3d88c960d8349cd366f05fbccdp14@STRBP

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