UBERON:0005399: Difference between revisions
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|obo_creation_date= | |obo_creation_date= | ||
|subset=organ_slim | |subset=organ_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:06, 26 June 2012
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003937(sex gland) |
|---|
Children
| is a: | UBERON:0006868 (seminal fluid secreting gland),UBERON:0010147 (male accessory sex gland) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10022-101D4 (prostate, adult, pool1)
- 10092-102C2
- 10201-103F3 (seminal vesicle, adult)
- 10439-106E7 (prostate cancer cell line:PC-3)
- 10490-107B4 (prostate cancer cell line:DU145)
- 10491-107B5
- 11253-116F2 (Prostate Epithelial Cells (polarized), donor1)
- 11254-116F3 (Prostate Stromal Cells, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11331-117E8 (Prostate Epithelial Cells, donor2)
... further results Mouse (Mus musculus)
- 10022-101D4 (prostate, adult, pool1)
- 10092-102C2
- 10201-103F3 (seminal vesicle, adult)
- 10439-106E7 (prostate cancer cell line:PC-3)
- 10490-107B4 (prostate cancer cell line:DU145)
- 10491-107B5
- 11253-116F2 (Prostate Epithelial Cells (polarized), donor1)
- 11254-116F3 (Prostate Stromal Cells, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11331-117E8 (Prostate Epithelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005399 (male reproductive gland), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42543275..42543292,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42543275..42543292, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:63673922..63673930,+#_9f918517178583dbd25b2f87577d7bd0 | p6@Defb42 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42541896..42541906,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42541896..42541906, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:53679087..53679125,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr10:53679087..53679125, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28947798..28947809,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28947798..28947809, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28916715..28916726,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28916715..28916726, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:164159170..164159177,+#_9f918517178583dbd25b2f87577d7bd0 | p6@Svs5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28922117..28922126,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28922117..28922126, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:94226733..94226740,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr11:94226733..94226740, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:58602232..58602239,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr12:58602232..58602239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14661555..14661583,-#_9f918517178583dbd25b2f87577d7bd0 | p2@uc008iko.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:4563121..4563128,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr18:4563121..4563128, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42535349..42535374,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42535349..42535374, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:119352000..119352016,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:119352000..119352016, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28931830..28931852,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28931830..28931852, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:103012501..103012510,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:103012501..103012510, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:110113835..110113840,-#_9f918517178583dbd25b2f87577d7bd0 | p15@LOC640248, p21@Wars |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:54955399..54955415,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:54955399..54955415, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28937834..28937844,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28937834..28937844, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28939739..28939749,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28939739..28939749, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:94930128..94930135,+#_9f918517178583dbd25b2f87577d7bd0 | p8@Tmod4 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42536574..42536577,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536574..42536577, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:19766363..19766365,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr17:19766363..19766365, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:137642164..137642172,-#_9f918517178583dbd25b2f87577d7bd0 | p5@Col4a6 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28942860..28942868,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942860..28942868, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28914499..28914509,+#_9f918517178583dbd25b2f87577d7bd0 | p6@9530053A07Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28914655..28914657,+#_9f918517178583dbd25b2f87577d7bd0 | p10@9530053A07Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122971508..122971523,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122971508..122971523, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:110113835..110113840,-#_9f918517178583dbd25b2f87577d7bd0 | p15@LOC640248, p21@Wars |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122971508..122971523,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122971508..122971523, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:105606509..105606520,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr3:105606509..105606520, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28927281..28927289,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28927281..28927289, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28927581..28927592,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28927581..28927592, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:75093434..75093448,-#_9f918517178583dbd25b2f87577d7bd0 | p@chrX:75093434..75093448, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42536921..42536936,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536921..42536936, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:164101774..164101787,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:164101774..164101787, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:69839714..69839737,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr14:69839714..69839737, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:41580319..41580330,+#_9f918517178583dbd25b2f87577d7bd0 | p9@Dnaic1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28942088..28942093,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942088..28942093, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28900601..28900608,+#_9f918517178583dbd25b2f87577d7bd0 | p11@Fcgbp |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28942860..28942868,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942860..28942868, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28900616..28900625,+#_9f918517178583dbd25b2f87577d7bd0 | p12@Fcgbp |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122965788..122965795,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122965788..122965795, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122965788..122965795,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122965788..122965795, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9802670..9802677,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:9802670..9802677, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:164158520..164158525,+#_9f918517178583dbd25b2f87577d7bd0 | p5@Svs5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:80142468..80142475,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80142468..80142475, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28924772..28924777,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28924772..28924777, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:55028116..55028147,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:55028116..55028147, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28924932..28924940,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28924932..28924940, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:73798446..73798448,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:73798446..73798448, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28925202..28925208,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28925202..28925208, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42536312..42536321,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536312..42536321, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:36444811..36444823,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:36444811..36444823, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28942088..28942093,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942088..28942093, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:122958496..122958543,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122958496..122958543, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:41338803..41338813,-#_9f918517178583dbd25b2f87577d7bd0 | p6@Tm9sf3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:122958496..122958543,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:122958496..122958543, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42543522..42543533,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42543522..42543533, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:80157036..80157037,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80157036..80157037, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:11354136..11354149,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr19:11354136..11354149, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:54771443..54771448,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:54771443..54771448, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28922537..28922558,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28922537..28922558, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28937834..28937844,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28937834..28937844, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28939647..28939657,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28939647..28939657, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:12166400..12166446,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr17:12166400..12166446, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42541034..42541044,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42541034..42541044, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:36341437..36341453,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:36341437..36341453, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:20500850..20500853,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:20500850..20500853, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:80142468..80142475,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr2:80142468..80142475, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:88222368..88222373,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:88222368..88222373, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28916683..28916688,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28916683..28916688, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:152404564..152404614,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr4:152404564..152404614, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:105606540..105606551,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr3:105606540..105606551, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:75083305..75083315,-#_9f918517178583dbd25b2f87577d7bd0 | p@chrX:75083305..75083315, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:4563121..4563128,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr18:4563121..4563128, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:44360499..44360503,+#_9f918517178583dbd25b2f87577d7bd0 | p1@ENSMUST00000097586 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28927581..28927592,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28927581..28927592, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:110113730..110113739,-#_9f918517178583dbd25b2f87577d7bd0 | p12@LOC640248, p18@Wars |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:73798446..73798448,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr1:73798446..73798448, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28931865..28931876,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28931865..28931876, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28939595..28939598,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28939595..28939598, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:94930140..94930149,+#_9f918517178583dbd25b2f87577d7bd0 | p6@Tmod4 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:42536364..42536367,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536364..42536367, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28942648..28942659,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942648..28942659, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28914339..28914347,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28914339..28914347, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28947742..28947743,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28947742..28947743, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:110113730..110113739,-#_9f918517178583dbd25b2f87577d7bd0 | p12@LOC640248, p18@Wars |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28925202..28925208,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28925202..28925208, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28927304..28927321,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28927304..28927321, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:53679087..53679125,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr10:53679087..53679125, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:36339759..36339765,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr9:36339759..36339765, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:41338803..41338813,-#_9f918517178583dbd25b2f87577d7bd0 | p6@Tm9sf3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:75090384..75090427,-#_9f918517178583dbd25b2f87577d7bd0 | p@chrX:75090384..75090427, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:116675703..116675710,-#_9f918517178583dbd25b2f87577d7bd0 | p2@9530003J23Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:42536574..42536577,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr6:42536574..42536577, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:33240968..33241002,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr5:33240968..33241002, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:28940253..28940263,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28940253..28940263, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28942648..28942659,+#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28942648..28942659, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:28900300..28900312,-#_9f918517178583dbd25b2f87577d7bd0 | p@chr7:28900300..28900312, - |
