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UBERON:0005721

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Name:pronephric mesoderm
Xrefs:
links:

AAO:0011090
EFO:0003479
TAO:0000067
VHOG:0001239
XAO:0000264

ZFA:0000067
Synonyms: "pronephric anlage" RELATED [XAO:0000264]
"pronephric bulge" RELATED [XAO:0000264]
"pronephric mesenchyme" RELATED [XAO:0000264]
"pronephric primordium" RELATED [XAO:0000264]
Comments:the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007297(presumptive pronephric mesoderm)
part_of:UBERON:0003064(intermediate mesoderm)



Children

develops from:UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
4.54e-44FFCP PHASE2:Mm9::chr5:35930667..35930691,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:35930667..35930691, +
4.54e-44FFCP PHASE1:Mm9::chr13:21379065..21379072,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379065..21379072, -
4.54e-44FFCP PHASE2:Mm9::chrX:160347529..160347538,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:160347529..160347538, +
4.54e-44FFCP PHASE2:Mm9::chr17:35249011..35249020,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr17:35249011..35249020, -
4.54e-44FFCP PHASE1:Mm9::chr11:53938008..53938022,+#_a36a387a3a10bbdf54775f8b8ef579b0p11@P4ha2
4.54e-44FFCP PHASE1:Mm9::chrX:160347529..160347538,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:160347529..160347538, +
4.54e-44FFCP PHASE1:Mm9::chr8:25706083..25706089,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@Ido1
4.54e-44FFCP PHASE1:Mm9::chr1:90155722..90155743,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90155722..90155743, +
4.54e-44FFCP PHASE1:Mm9::chr11:63779573..63779582,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:63779573..63779582, +
4.54e-44FFCP PHASE1:Mm9::chr10:91753336..91753348,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:91753336..91753348, -
4.54e-44FFCP PHASE2:Mm9::chr13:21379125..21379144,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379125..21379144, -
4.54e-44FFCP PHASE1:Mm9::chr9:65941913..65941923,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:65941913..65941923, -
4.54e-44FFCP PHASE1:Mm9::chr9:26688157..26688159,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:26688157..26688159, -
4.54e-44FFCP PHASE2:Mm9::chr14:63611303..63611312,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:63611303..63611312, +
4.54e-44FFCP PHASE1:Mm9::chr4:106731469..106731481,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:106731469..106731481, -
4.54e-44FFCP PHASE2:Mm9::chr2:164479326..164479336,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:164479326..164479336, +
4.54e-44FFCP PHASE1:Mm9::chr2:160573108..160573123,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:160573108..160573123, +
4.54e-44FFCP PHASE2:Mm9::chr13:52712744..52712754,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:52712744..52712754, +
4.54e-44FFCP PHASE1:Mm9::chrX:75798114..75798125,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:75798114..75798125, -
4.54e-44FFCP PHASE2:Mm9::chr1:155698178..155698191,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:155698178..155698191, -
4.54e-44FFCP PHASE1:Mm9::chr1:18213651..18213663,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@Defb44-ps
4.54e-44FFCP PHASE1:Mm9::chr11:96150839..96150842,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:96150839..96150842, -
4.54e-44FFCP PHASE2:Mm9::chrX:20219008..20219045,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:20219008..20219045, +
4.54e-44FFCP PHASE2:Mm9::chr9:26599476..26599505,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Glb1l2
4.54e-44FFCP PHASE1:Mm9::chr7:25565920..25565950,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:25565920..25565950, -
4.54e-44FFCP PHASE1:Mm9::chr9:35651788..35651804,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@9230110F15Rik
4.54e-44FFCP PHASE1:Mm9::chr2:148676859..148676866,-#_a36a387a3a10bbdf54775f8b8ef579b0p5@9230104L09Rik
4.54e-44FFCP PHASE1:Mm9::chr11:34107562..34107572,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:34107562..34107572, -
4.54e-44FFCP PHASE2:Mm9::chr5:110773795..110773801,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:110773795..110773801, +
4.54e-44FFCP PHASE1:Mm9::chr7:31507623..31507631,+#_a36a387a3a10bbdf54775f8b8ef579b0p4@Atp4a
4.54e-44FFCP PHASE2:Mm9::chr9:26719400..26719404,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:26719400..26719404, -
4.54e-44FFCP PHASE1:Mm9::chr1:87936238..87936249,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:87936238..87936249, +
4.54e-44FFCP PHASE1:Mm9::chr14:63611214..63611229,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:63611214..63611229, +
4.54e-44FFCP PHASE2:Mm9::chr1:90155951..90155962,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90155951..90155962, +
4.54e-44FFCP PHASE2:Mm9::chr1:18213651..18213663,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@Defb44-ps
4.54e-44FFCP PHASE1:Mm9::chr7:109379339..109379349,+#_a36a387a3a10bbdf54775f8b8ef579b0p15@Pgap2
4.54e-44FFCP PHASE2:Mm9::chr12:16664775..16664784,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:16664775..16664784, +
4.54e-44FFCP PHASE2:Mm9::chr11:53937918..53937922,+#_a36a387a3a10bbdf54775f8b8ef579b0p7@P4ha2
4.54e-44FFCP PHASE2:Mm9::chr14:67453354..67453365,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:67453354..67453365, -
4.54e-44FFCP PHASE2:Mm9::chr13:21380670..21380678,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21380670..21380678, -
4.54e-44FFCP PHASE2:Mm9::chr2:74440187..74440209,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:74440187..74440209, -
4.54e-44FFCP PHASE2:Mm9::chr8:96014490..96014496,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:96014490..96014496, +
4.54e-44FFCP PHASE2:Mm9::chrX:156829476..156829504,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:156829476..156829504, +
4.54e-44FFCP PHASE2:Mm9::chrX:50280126..50280140,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:50280126..50280140, +
4.54e-44FFCP PHASE2:Mm9::chr6:18338054..18338077,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr6:18338054..18338077, -
4.54e-44FFCP PHASE1:Mm9::chr5:31379486..31379501,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:31379486..31379501, +
4.54e-44FFCP PHASE2:Mm9::chr2:160573108..160573123,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:160573108..160573123, +
4.54e-44FFCP PHASE1:Mm9::chr13:21379372..21379404,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379372..21379404, +
4.54e-44FFCP PHASE2:Mm9::chr8:19141429..19141440,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:19141429..19141440, +
4.54e-44FFCP PHASE1:Mm9::chr7:105313229..105313234,-#_a36a387a3a10bbdf54775f8b8ef579b0p17@Capn5
4.54e-44FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:31379845..31379855, +
4.54e-44FFCP PHASE1:Mm9::chr13:24270118..24270122,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:24270118..24270122, -
4.54e-44FFCP PHASE1:Mm9::chr10:116399500..116399516,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:116399500..116399516, +
4.54e-44FFCP PHASE1:Mm9::chrX:50280199..50280211,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:50280199..50280211, +
4.54e-44FFCP PHASE1:Mm9::chr8:91107095..91107103,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:91107095..91107103, +
4.54e-44FFCP PHASE1:Mm9::chr5:88272459..88272484,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:88272459..88272484, -
4.54e-44FFCP PHASE1:Mm9::chr2:164480465..164480471,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@Wfdc9
4.54e-44FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_a36a387a3a10bbdf54775f8b8ef579b0p5@9230104L09Rik
4.54e-44FFCP PHASE1:Mm9::chr14:66589365..66589371,+#_a36a387a3a10bbdf54775f8b8ef579b0p19@Clu
4.54e-44FFCP PHASE1:Mm9::chr11:101958887..101958896,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101958887..101958896, -
4.54e-44FFCP PHASE2:Mm9::chrX:164787162..164787188,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:164787162..164787188, -
4.54e-44FFCP PHASE1:Mm9::chr9:34813361..34813403,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:34813361..34813403, -