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UBERON:0005721

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Name:pronephric mesoderm
Namespace:FANTOM
Xrefs:
links:

AAO:0011090
EFO:0003479
TAO:0000067
VHOG:0001239
XAO:0000264

ZFA:0000067
Synonyms: "pronephric anlage" RELATED [XAO:0000264]
"pronephric bulge" RELATED [XAO:0000264]
"pronephric mesenchyme" RELATED [XAO:0000264]
"pronephric primordium" RELATED [XAO:0000264]
Comments:the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007297(presumptive pronephric mesoderm)
part_of:UBERON:0003064(intermediate mesoderm)



Children

develops from:UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc+, p@chr10:127470655..127470664
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6-, p@chr9:26611246..26611253
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6+, p@chr9:26732045..26732085
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
4.54e-44FFCP PHASE2:Mm9::chr11:59845404..59845416,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:59845404..59845416, -
4.54e-44FFCP PHASE1:Mm9::chr12:104945515..104945524,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:104945515..104945524, -
4.54e-44FFCP PHASE1:Mm9::chrX:75798157..75798162,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:75798157..75798162, -
4.54e-44FFCP PHASE1:Mm9::chr18:62775330..62775347,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:62775330..62775347, -
4.54e-44FFCP PHASE1:Mm9::chr10:116399500..116399516,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:116399500..116399516, +
4.54e-44FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:39707572..39707583, +
4.54e-44FFCP PHASE1:Mm9::chr9:70779586..70779596,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:70779586..70779596, +
4.54e-44FFCP PHASE1:Mm9::chr9:35585507..35585517,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@Gm17727
4.54e-44FFCP PHASE1:Mm9::chr15:83143938..83143953,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:83143938..83143953, -
4.54e-44FFCP PHASE2:Mm9::chr15:72756032..72756041,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:72756032..72756041, -
4.54e-44FFCP PHASE2:Mm9::chr13:52712744..52712754,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:52712744..52712754, +
4.54e-44FFCP PHASE2:Mm9::chr8:107073888..107073914,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:107073888..107073914, -
4.54e-44FFCP PHASE2:Mm9::chr1:156048695..156048707,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:156048695..156048707, +
4.54e-44FFCP PHASE1:Mm9::chr7:151927980..151927988,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:151927980..151927988, +
4.54e-44FFCP PHASE2:Mm9::chr14:51627586..51627595,+#_a36a387a3a10bbdf54775f8b8ef579b0p4@Rnase10
4.54e-44FFCP PHASE2:Mm9::chr13:21381777..21381789,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21381777..21381789, -
4.54e-44FFCP PHASE1:Mm9::chr18:44261480..44261486,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:44261480..44261486, +
4.54e-44FFCP PHASE1:Mm9::chr9:26704579..26704582,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:26704579..26704582, -
4.54e-44FFCP PHASE1:Mm9::chr11:101959282..101959299,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101959282..101959299, -
4.54e-44FFCP PHASE2:Mm9::chr8:25706074..25706082,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Ido1
4.54e-44FFCP PHASE2:Mm9::chr12:16664708..16664723,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:16664708..16664723, +
4.54e-44FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_a36a387a3a10bbdf54775f8b8ef579b0p6@Defb20
4.54e-44FFCP PHASE2:Mm9::chr10:91753336..91753348,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:91753336..91753348, -
4.54e-44FFCP PHASE1:Mm9::chr7:75293847..75293851,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:75293847..75293851, +
4.54e-44FFCP PHASE1:Mm9::chr13:21379322..21379338,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379322..21379338, -
4.54e-44FFCP PHASE1:Mm9::chr17:73221062..73221084,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr17:73221062..73221084, +
4.54e-44FFCP PHASE1:Mm9::chr8:25706083..25706089,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@Ido1
4.54e-44FFCP PHASE1:Mm9::chr2:25349414..25349424,-#_a36a387a3a10bbdf54775f8b8ef579b0p5@Lcn12
4.54e-44FFCP PHASE2:Mm9::chr9:35657557..35657582,-#_a36a387a3a10bbdf54775f8b8ef579b0p2@Gm3428
4.54e-44FFCP PHASE2:Mm9::chr11:101959282..101959299,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101959282..101959299, -
4.54e-44FFCP PHASE2:Mm9::chrX:12571771..12571780,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:12571771..12571780, -
4.54e-44FFCP PHASE2:Mm9::chr11:63779573..63779582,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:63779573..63779582, +
4.54e-44FFCP PHASE2:Mm9::chr2:167688595..167688624,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:167688595..167688624, +
4.54e-44FFCP PHASE1:Mm9::chrX:50280181..50280192,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:50280181..50280192, +
4.54e-44FFCP PHASE2:Mm9::chrX:20422498..20422506,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:20422498..20422506, +
4.54e-44FFCP PHASE1:Mm9::chrX:160347529..160347538,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:160347529..160347538, +
4.54e-44FFCP PHASE1:Mm9::chr1:168436322..168436326,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:168436322..168436326, -
4.54e-44FFCP PHASE2:Mm9::chr1:165219453..165219469,-#_a36a387a3a10bbdf54775f8b8ef579b0p11@Prrx1
4.54e-44FFCP PHASE1:Mm9::chr7:56772735..56772741,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:56772735..56772741, +
4.54e-44FFCP PHASE1:Mm9::chr1:11079838..11079844,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:11079838..11079844, +
4.54e-44FFCP PHASE2:Mm9::chr9:42151966..42151976,-#_a36a387a3a10bbdf54775f8b8ef579b0p9@Tecta
4.54e-44FFCP PHASE1:Mm9::chr8:19141371..19141383,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:19141371..19141383, +
4.54e-44FFCP PHASE1:Mm9::chr1:89597834..89597840,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:89597834..89597840, +
4.54e-44FFCP PHASE1:Mm9::chr11:96150839..96150842,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:96150839..96150842, -
4.54e-44FFCP PHASE2:Mm9::chr2:164434157..164434162,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:164434157..164434162, -
4.54e-44FFCP PHASE2:Mm9::chr7:25563187..25563205,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr7:25563187..25563205, +
4.54e-44FFCP PHASE2:Mm9::chr11:105798218..105798228,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:105798218..105798228, -
4.54e-44FFCP PHASE1:Mm9::chr4:150092027..150092070,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:150092027..150092070, -
4.54e-44FFCP PHASE2:Mm9::chr1:89596972..89596981,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:89596972..89596981, +
4.54e-44FFCP PHASE1:Mm9::chr15:75329148..75329155,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:75329148..75329155, +
4.54e-44FFCP PHASE1:Mm9::chr13:21379125..21379144,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379125..21379144, -
4.54e-44FFCP PHASE2:Mm9::chrX:130496372..130496393,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:130496372..130496393, -
4.54e-44FFCP PHASE2:Mm9::chr1:11079838..11079844,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:11079838..11079844, +
4.54e-44FFCP PHASE2:Mm9::chr2:148676901..148676906,-#_a36a387a3a10bbdf54775f8b8ef579b0p8@9230104L09Rik
4.54e-44FFCP PHASE2:Mm9::chr4:134893699..134893708,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr4:134893699..134893708, +
4.54e-44FFCP PHASE2:Mm9::chr19:17591760..17591765,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr19:17591760..17591765, +
4.54e-44FFCP PHASE2:Mm9::chr11:101958844..101958851,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101958844..101958851, -
4.54e-44FFCP PHASE2:Mm9::chr6:54359310..54359337,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr6:54359310..54359337, -
4.54e-44FFCP PHASE1:Mm9::chr7:105313229..105313234,-#_a36a387a3a10bbdf54775f8b8ef579b0p17@Capn5
4.54e-44FFCP PHASE2:Mm9::chr13:21379430..21379437,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21379430..21379437, -
4.54e-44FFCP PHASE1:Mm9::chr14:63630486..63630493,+#_a36a387a3a10bbdf54775f8b8ef579b0p5@Defb43
4.54e-44FFCP PHASE1:Mm9::chr10:52101299..52101305,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:52101299..52101305, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.