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UBERON:0005728

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Name:extraembryonic mesoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EHDAA2:0000474

VHOG:0000616
Synonyms: "extra-embryonic mesoderm" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast)
part_of:UBERON:0016887(entire extraembryonic component)



Children

develops from:UBERON:0007806 (connecting stalk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926401..45926410, -
1.1e-59FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_f1700f6fa279d66bc6746540ac32fc48p6@VDAC3
1.1e-59FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119279086..119279095, +
1.1e-59FFCP PHASE1:Hg19::chr2:45063061..45063082,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:45063061..45063082, -
1.1e-59FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_f1700f6fa279d66bc6746540ac32fc48p42@IGFBP3
1.1e-59FFCP PHASE1:Hg19::chr3:157301317..157301362,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:157301317..157301362, -
1.1e-59FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_f1700f6fa279d66bc6746540ac32fc48p@chr11:128154946..128154955, +
1.1e-59FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363901..106363915, -
1.1e-59FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:65209811..65209818, +
1.1e-59FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293218..148293252, +
1.1e-59FFCP PHASE2:Hg19::chr1:177159780..177159790,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:177159780..177159790, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957827..76957835, +
1.1e-59FFCP PHASE1:Hg19::chr6:491208..491217,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:491208..491217, -
1.1e-59FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_f1700f6fa279d66bc6746540ac32fc48p11@RANBP1
1.1e-59FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995293..74995311, -
1.1e-59FFCP PHASE2:Hg19::chr10:30336924..30336935,-#_f1700f6fa279d66bc6746540ac32fc48p15@KIAA1462
1.1e-59FFCP PHASE2:Hg19::chr6:87324200..87324219,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324200..87324219, +
1.1e-59FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926344..45926350, -
1.1e-59FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363986..106363994, -
1.1e-59FFCP PHASE2:Hg19::chr1:234765107..234765117,+#_f1700f6fa279d66bc6746540ac32fc48p7@LINC00184
1.1e-59FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:15633244..15633249, +
1.1e-59FFCP PHASE2:Hg19::chr19:53511749..53511757,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511749..53511757, -
1.1e-59FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_f1700f6fa279d66bc6746540ac32fc48p4@AF430683, p4@AF430684, p4@AF430685
1.1e-59FFCP PHASE2:Hg19::chr10:111805643..111805655,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:111805643..111805655, -
1.1e-59FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167938808..167938815, -
1.1e-59FFCP PHASE2:Hg19::chr7:135705379..135705388,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705379..135705388, +
1.1e-59FFCP PHASE2:Hg19::chr21:18179795..18179798,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179795..18179798, -
1.1e-59FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:212870782..212870788, -
1.1e-59FFCP PHASE2:Hg19::chr10:15035404..15035424,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:15035404..15035424, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_f1700f6fa279d66bc6746540ac32fc48p11@MFF
1.1e-59FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_f1700f6fa279d66bc6746540ac32fc48p@chr22:37484406..37484413, +
1.1e-59FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_f1700f6fa279d66bc6746540ac32fc48p@chr12:77198556..77198565, +
1.1e-59FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442102..38442111, +
1.1e-59FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr14:76957775..76957781,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957775..76957781, +
1.1e-59FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:6191002..6191007, -
1.1e-59FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135735084..135735112, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180126..18180130, -
1.1e-59FFCP PHASE1:Hg19::chr17:40021018..40021028,+#_f1700f6fa279d66bc6746540ac32fc48p@chr17:40021018..40021028, +
1.1e-59FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74997054..74997058, -
1.1e-59FFCP PHASE2:Hg19::chr6:138023015..138023024,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023015..138023024, -
1.1e-59FFCP PHASE2:Hg19::chr7:142250929..142250940,-#_f1700f6fa279d66bc6746540ac32fc48p3@AF430683, p3@AF430684, p3@AF430685
1.1e-59FFCP PHASE2:Hg19::chr4:167951727..167951732,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167951727..167951732, -
1.1e-59FFCP PHASE2:Hg19::chr21:43934831..43934840,+#_f1700f6fa279d66bc6746540ac32fc48p@chr21:43934831..43934840, +
1.1e-59FFCP PHASE2:Hg19::chr8:56625901..56625913,+#_f1700f6fa279d66bc6746540ac32fc48p@chr8:56625901..56625913, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216588..228216609,+#_f1700f6fa279d66bc6746540ac32fc48p10@MFF
1.1e-59FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488921..49488932, -
1.1e-59FFCP PHASE2:Hg19::chr19:42682242..42682253,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:42682242..42682253, -
1.1e-59FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:64034078..64034124, -
1.1e-59FFCP PHASE2:Hg19::chr7:106397632..106397643,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397632..106397643, +
1.1e-59FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111319059..111319101, -
1.1e-59FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:207617923..207617929, -
1.1e-59FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_f1700f6fa279d66bc6746540ac32fc48p5@ENST00000433770
1.1e-59FFCP PHASE2:Hg19::chr19:7599792..7599797,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:7599792..7599797, +
1.1e-59FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:17543537..17543548, -
1.1e-59FFCP PHASE2:Hg19::chr9:75002215..75002221,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:75002215..75002221, -
1.1e-59FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:2930946..2930963, +
1.1e-59FFCP PHASE2:Hg19::chr20:22771662..22771675,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:22771662..22771675, +
1.1e-59FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:31524425..31524444, -
1.1e-59FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:129054695..129054717, -
1.1e-59FFCP PHASE2:Hg19::chr20:39574012..39574015,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:39574012..39574015, +
1.1e-59FFCP PHASE2:Hg19::chr8:12548586..12548602,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:12548586..12548602, -
1.1e-59FFCP PHASE2:Hg19::chr2:148279057..148279078,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148279057..148279078, +
1.1e-59FFCP PHASE2:Hg19::chr1:172807491..172807499,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:172807491..172807499, -
1.1e-59FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957754..76957760, +
1.1e-59FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167748986..167748989, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324164..87324175, +
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149490934..149490939, -
1.1e-59FFCP PHASE2:Hg19::chr1:207627342..207627349,+#_f1700f6fa279d66bc6746540ac32fc48p3@CR2
1.1e-59FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:28145264..28145272, -
1.1e-59FFCP PHASE2:Hg19::chr19:10987850..10987854,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:10987850..10987854, +
1.1e-59FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363860..106363870, -
1.1e-59FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293141..148293150, +
1.1e-59FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119279036..119279047, +
1.1e-59FFCP PHASE2:Hg19::chr9:74981579..74981583,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74981579..74981583, -
1.1e-59FFCP PHASE2:Hg19::chr6:484706..484722,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:484706..484722, +
1.1e-59FFCP PHASE2:Hg19::chr4:167982726..167982736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167982726..167982736, -
1.1e-59FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:109653507..109653518, +
1.1e-59FFCP PHASE2:Hg19::chr8:59790413..59790418,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59790413..59790418, -
1.1e-59FFCP PHASE2:Hg19::chr10:61574767..61574776,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:61574767..61574776, -
1.1e-59FFCP PHASE1:Hg19::chr19:53511711..53511720,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511711..53511720, -
1.1e-59FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76017386..76017395, -
1.1e-59FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705366..135705371, +
1.1e-59FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179708..18179733, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995216..74995247, -
1.1e-59FFCP PHASE2:Hg19::chr15:43323789..43323811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323789..43323811, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_f1700f6fa279d66bc6746540ac32fc48p14@MFF
1.1e-59FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:10129292..10129306, +
1.1e-59FFCP PHASE2:Hg19::chr12:24889813..24889821,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:24889813..24889821, -
1.1e-59FFCP PHASE1:Hg19::chr6:150322254..150322291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:150322254..150322291, -
1.1e-59FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:77713534..77713543, +
1.1e-59FFCP PHASE2:Hg19::chr7:45954712..45954720,-#_f1700f6fa279d66bc6746540ac32fc48p41@IGFBP3
1.1e-59FFCP PHASE2:Hg19::chr12:77198556..77198565,+#_f1700f6fa279d66bc6746540ac32fc48p@chr12:77198556..77198565, +
1.1e-59FFCP PHASE2:Hg19::chrX:146004822..146004839,-#_f1700f6fa279d66bc6746540ac32fc48p@chrX:146004822..146004839, -

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